Variant report

Variant	rs1078675
Chromosome Location	chr5:124217262-124217263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10041789	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10051781	0.83[ASN][1000 genomes]
rs10058773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10065037	0.84[ASN][1000 genomes]
rs10077640	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241774	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13362134	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4367296	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4434376	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4527598	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6595557	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880908	0.84[ASN][1000 genomes]
rs6881675	0.84[ASN][1000 genomes]
rs753671	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7718357	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7721141	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs960833	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124203000-124217800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:124203400-124217400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
4	chr5:124213600-124217400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:124214200-124217600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:124214600-124221000	Weak transcription	Psoas Muscle	Psoas
7	chr5:124215000-124217400	Enhancers	Placenta	Placenta
8	chr5:124215400-124222600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:124215600-124217400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
11	chr5:124216400-124217600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:124216600-124217400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:124216600-124217400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:124216600-124217600	Enhancers	Fetal Intestine Large	intestine
15	chr5:124216600-124217600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr5:124216800-124217400	Enhancers	Lung	lung
17	chr5:124216800-124217400	Enhancers	Stomach Mucosa	stomach
18	chr5:124216800-124217600	Enhancers	Colonic Mucosa	Colon
19	chr5:124216800-124217600	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:124216800-124217600	Enhancers	Fetal Intestine Small	intestine
21	chr5:124217000-124217400	Enhancers	Gastric	stomach
22	chr5:124217000-124217400	Enhancers	Spleen	Spleen
23	chr5:124217000-124217600	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr5:124217000-124218800	Enhancers	Brain Hippocampus Middle	brain
25	chr5:124217000-124219000	Weak transcription	Placenta Amnion	Placenta Amnion

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