Variant report

Variant	rs6595557
Chromosome Location	chr5:124221582-124221583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10041789	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10051781	0.88[ASN][1000 genomes]
rs10058773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10065037	0.89[ASN][1000 genomes]
rs10077640	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10078386	0.80[CHB][hapmap]
rs1078675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241774	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13362134	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4367296	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4434376	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4527598	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880908	0.88[ASN][1000 genomes]
rs6881675	0.89[ASN][1000 genomes]
rs753671	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718357	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7721141	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs960833	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
2	chr5:124215400-124222600	Weak transcription	Brain Anterior Caudate	brain
3	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
4	chr5:124217400-124222200	Weak transcription	Brain Angular Gyrus	brain
5	chr5:124217600-124223400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:124218400-124223400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:124218800-124222400	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:124219400-124223800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:124219600-124222200	Weak transcription	Dnd41	blood
10	chr5:124219800-124222600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:124220000-124224000	Weak transcription	Fetal Stomach	stomach
12	chr5:124220200-124223000	Weak transcription	Stomach Mucosa	stomach
13	chr5:124220200-124223400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:124220400-124222200	Weak transcription	Fetal Intestine Small	intestine
15	chr5:124220400-124222400	Weak transcription	Fetal Intestine Large	intestine
16	chr5:124220400-124222800	Weak transcription	Liver	Liver
17	chr5:124220600-124223000	Weak transcription	Small Intestine	intestine
18	chr5:124221400-124222800	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links