The 2.0 version of rSNPBase

Variant report

Variant rs6880908
Chromosome Location chr5:124238375-124238376
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:124223200-124242200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:124235200-124242000 Weak transcription NHDF-Ad bronchial
3 chr5:124236600-124238800 Enhancers Brain Substantia Nigra brain
4 chr5:124236600-124238800 Enhancers Pancreatic Islets Pancreatic Islet
5 chr5:124236600-124240000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
6 chr5:124236800-124238400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr5:124236800-124238600 Enhancers NH-A brain
8 chr5:124236800-124238800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr5:124236800-124240200 Enhancers Cortex derived primary cultured neurospheres brain
10 chr5:124237000-124238600 Enhancers iPS-18 Cell Line embryonic stem cell
11 chr5:124237000-124243400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:124237200-124238800 Enhancers Fetal Heart heart
13 chr5:124237200-124238800 Enhancers Stomach Mucosa stomach
14 chr5:124237200-124240000 Enhancers Dnd41 blood
15 chr5:124237400-124238600 Enhancers Skeletal Muscle Male skeletal muscle
16 chr5:124237400-124238800 Enhancers Primary hematopoietic stem cells blood
17 chr5:124237400-124239000 Enhancers Primary hematopoietic stem cells short term culture blood
18 chr5:124237400-124239400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:124237400-124239600 Enhancers Primary B cells from cord blood blood
20 chr5:124237600-124238400 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr5:124237600-124238400 Enhancers Adipose Nuclei Adipose
22 chr5:124237600-124238400 Enhancers Brain Anterior Caudate brain
23 chr5:124237600-124238400 Enhancers Fetal Intestine Small intestine
24 chr5:124237600-124238400 Enhancers Fetal Stomach stomach
25 chr5:124237600-124238400 Enhancers Psoas Muscle Psoas
26 chr5:124237600-124238400 Enhancers Sigmoid Colon Sigmoid Colon
27 chr5:124237600-124238600 Enhancers Brain Cingulate Gyrus brain
28 chr5:124237600-124238600 Enhancers Brain Hippocampus Middle brain
29 chr5:124237600-124238600 Enhancers Fetal Intestine Large intestine
30 chr5:124237600-124238600 Enhancers Fetal Kidney kidney
31 chr5:124237600-124238600 Enhancers Fetal Muscle Leg muscle
32 chr5:124237600-124238600 Enhancers Skeletal Muscle Female skeletal muscle
33 chr5:124237600-124238600 Enhancers HSMMtube muscle
34 chr5:124237600-124238600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
35 chr5:124237600-124238800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr5:124237600-124238800 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr5:124237600-124239000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr5:124237600-124239400 Enhancers Primary monocytes fromperipheralblood blood
39 chr5:124237600-124239600 Enhancers Primary B cells from peripheral blood blood
40 chr5:124237600-124243000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr5:124237600-124246800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr5:124237800-124238400 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
43 chr5:124237800-124238400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:124237800-124238400 Bivalent Enhancer iPS-15b Cell Line embryonic stem cell
45 chr5:124237800-124238400 Enhancers Aorta Aorta
46 chr5:124237800-124238400 Enhancers Brain Germinal Matrix brain
47 chr5:124237800-124238400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
48 chr5:124237800-124238400 Enhancers Fetal Thymus thymus
49 chr5:124237800-124238400 Enhancers Right Atrium heart
50 chr5:124237800-124238400 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015