Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041789	0.82[ASN][1000 genomes]
rs10065037	0.81[ASN][1000 genomes]
rs10077640	0.81[ASN][1000 genomes]
rs1026009	0.83[EUR][1000 genomes]
rs12514161	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12517390	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520547	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13362134	0.82[ASN][1000 genomes]
rs2028855	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35649581	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4836129	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4836130	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372816	0.86[ASN][1000 genomes]
rs6876107	0.83[ASN][1000 genomes]
rs6876737	0.85[ASN][1000 genomes]
rs6880908	0.80[ASN][1000 genomes]
rs6881675	0.81[ASN][1000 genomes]
rs6886725	0.85[ASN][1000 genomes]
rs7721141	0.81[ASN][1000 genomes]
rs960833	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124249400-124263200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124259000-124263200	Weak transcription	HUVEC	blood vessel
3	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:124259800-124263000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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