Variant report

Variant	rs7721141
Chromosome Location	chr5:124238417-124238418
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10041789	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10051781	0.99[ASN][1000 genomes]
rs10058773	0.85[EUR][1000 genomes]
rs10065037	1.00[ASN][1000 genomes]
rs10077640	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1078675	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241774	0.85[EUR][1000 genomes]
rs12514161	0.81[ASN][1000 genomes]
rs13362134	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2408225	0.81[ASN][1000 genomes]
rs4367296	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4434376	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4527598	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6595557	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6876107	0.83[ASN][1000 genomes]
rs6880908	0.99[ASN][1000 genomes]
rs6881675	1.00[ASN][1000 genomes]
rs6886725	0.85[ASN][1000 genomes]
rs753671	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7718357	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs960833	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial
3	chr5:124236600-124238800	Enhancers	Brain Substantia Nigra	brain
4	chr5:124236600-124238800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:124236600-124240000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:124236800-124238600	Enhancers	NH-A	brain
7	chr5:124236800-124238800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:124236800-124240200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:124237000-124238600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:124237200-124238800	Enhancers	Fetal Heart	heart
12	chr5:124237200-124238800	Enhancers	Stomach Mucosa	stomach
13	chr5:124237200-124240000	Enhancers	Dnd41	blood
14	chr5:124237400-124238600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr5:124237400-124238800	Enhancers	Primary hematopoietic stem cells	blood
16	chr5:124237400-124239000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:124237400-124239400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:124237400-124239600	Enhancers	Primary B cells from cord blood	blood
19	chr5:124237600-124238600	Enhancers	Brain Cingulate Gyrus	brain
20	chr5:124237600-124238600	Enhancers	Brain Hippocampus Middle	brain
21	chr5:124237600-124238600	Enhancers	Fetal Intestine Large	intestine
22	chr5:124237600-124238600	Enhancers	Fetal Kidney	kidney
23	chr5:124237600-124238600	Enhancers	Fetal Muscle Leg	muscle
24	chr5:124237600-124238600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr5:124237600-124238600	Enhancers	HSMMtube	muscle
26	chr5:124237600-124238600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr5:124237600-124238800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:124237600-124238800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr5:124237600-124239000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:124237600-124239400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:124237600-124239600	Enhancers	Primary B cells from peripheral blood	blood
32	chr5:124237600-124243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:124237800-124238600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
35	chr5:124237800-124238600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
36	chr5:124237800-124238600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:124237800-124238600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:124237800-124238600	Enhancers	Duodenum Mucosa	Duodenum
39	chr5:124237800-124238600	Enhancers	Fetal Lung	lung
40	chr5:124237800-124238600	Enhancers	Small Intestine	intestine
41	chr5:124237800-124238600	Enhancers	Spleen	Spleen
42	chr5:124237800-124238800	Flanking Active TSS	GM12878-XiMat	blood
43	chr5:124237800-124239800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:124238000-124238600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:124238000-124238600	Enhancers	Brain Angular Gyrus	brain
46	chr5:124238000-124238600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr5:124238000-124238800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
48	chr5:124238200-124241600	Weak transcription	Colon Smooth Muscle	Colon
49	chr5:124238200-124241600	Weak transcription	HSMM	muscle
50	chr5:124238200-124241800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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