Variant report

Variant	rs11241774
Chromosome Location	chr5:124207748-124207749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10041789	0.85[EUR][1000 genomes]
rs10058773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10077640	0.85[EUR][1000 genomes]
rs1078675	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13362134	0.84[EUR][1000 genomes]
rs4367296	0.89[EUR][1000 genomes]
rs4434376	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4527598	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6595557	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs753671	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7718357	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7721141	0.85[EUR][1000 genomes]
rs960833	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830473	chr5:124006421-124212038	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124201200-124209200	Enhancers	Fetal Lung	lung
2	chr5:124201200-124213200	Weak transcription	Pancreas	Pancrea
3	chr5:124202600-124212000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124203000-124208000	Weak transcription	Stomach Mucosa	stomach
5	chr5:124203000-124209600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:124203000-124217800	Weak transcription	Brain Substantia Nigra	brain
7	chr5:124203200-124207800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:124203200-124208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:124203200-124210800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:124203200-124210800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:124203200-124211000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:124203400-124208000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:124203400-124217400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:124203800-124208000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:124203800-124212200	Weak transcription	HSMMtube	muscle
16	chr5:124204600-124210000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:124205200-124209400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr5:124205400-124209200	Enhancers	Psoas Muscle	Psoas
19	chr5:124205400-124210000	Enhancers	Brain Germinal Matrix	brain
20	chr5:124205600-124208400	Weak transcription	Right Atrium	heart
21	chr5:124206000-124209600	Enhancers	Fetal Brain Male	brain
22	chr5:124206000-124210000	Weak transcription	HSMM	muscle
23	chr5:124206200-124209000	Enhancers	Fetal Brain Female	brain
24	chr5:124206600-124208400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:124206600-124208600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:124206600-124208600	Enhancers	Fetal Muscle Leg	muscle
27	chr5:124206600-124209600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr5:124206800-124208400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:124207000-124207800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:124207000-124214600	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:124207400-124207800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr5:124207600-124208200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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