Variant report

Variant	rs4527598
Chromosome Location	chr5:124225267-124225268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10041789	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10051781	0.88[ASN][1000 genomes]
rs10058773	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10065037	0.89[ASN][1000 genomes]
rs10077640	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1078675	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241774	0.96[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13362134	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4367296	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4434376	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6595557	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880908	0.88[ASN][1000 genomes]
rs6881675	0.89[ASN][1000 genomes]
rs753671	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718357	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7721141	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs960833	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124222200-124227000	Enhancers	Dnd41	blood
2	chr5:124222400-124225400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:124222600-124225600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:124222800-124225800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:124223000-124225400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:124223000-124225400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124223000-124225600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:124223000-124225600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:124223000-124226200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:124223200-124225800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:124223400-124225400	Enhancers	Fetal Heart	heart
13	chr5:124223400-124225600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:124223400-124225600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:124223800-124225400	Enhancers	Brain Germinal Matrix	brain
16	chr5:124223800-124225400	Enhancers	Ovary	ovary
17	chr5:124223800-124225400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:124223800-124225600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:124224000-124225400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:124224000-124225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:124224000-124225400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:124224000-124225400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:124224000-124225600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:124224000-124225600	Enhancers	Fetal Muscle Leg	muscle
25	chr5:124224200-124225400	Enhancers	Stomach Mucosa	stomach
26	chr5:124224200-124225400	Enhancers	A549	lung
27	chr5:124224200-124225600	Enhancers	Fetal Intestine Large	intestine
28	chr5:124224200-124225600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr5:124224200-124226000	Enhancers	Fetal Intestine Small	intestine
30	chr5:124224400-124225400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr5:124224400-124225400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:124224600-124225400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:124224600-124225400	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr5:124224600-124225400	Enhancers	Small Intestine	intestine
35	chr5:124224600-124226000	Enhancers	HUVEC	blood vessel
36	chr5:124224800-124225400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr5:124224800-124225400	Enhancers	Liver	Liver
38	chr5:124224800-124225400	Enhancers	Duodenum Mucosa	Duodenum
39	chr5:124224800-124225600	Enhancers	NH-A	brain
40	chr5:124224800-124225600	Enhancers	Osteobl	bone
41	chr5:124224800-124225800	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr5:124224800-124226000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:124225000-124225400	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr5:124225000-124225400	Enhancers	Colon Smooth Muscle	Colon
45	chr5:124225000-124225400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr5:124225000-124225400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr5:124225000-124225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:124225000-124225600	Enhancers	Fetal Brain Female	brain
49	chr5:124225000-124225600	Enhancers	Fetal Kidney	kidney
50	chr5:124225000-124225800	Enhancers	Fetal Lung	lung

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