Variant report

Variant	rs753671
Chromosome Location	chr5:124218192-124218193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10041789	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10051781	0.84[ASN][1000 genomes]
rs10058773	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10065037	0.85[ASN][1000 genomes]
rs10077640	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1078675	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241774	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13362134	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4367296	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4434376	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4527598	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6595557	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6880908	0.84[ASN][1000 genomes]
rs6881675	0.85[ASN][1000 genomes]
rs7718357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7721141	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs960833	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
2	chr5:124214600-124221000	Weak transcription	Psoas Muscle	Psoas
3	chr5:124215400-124222600	Weak transcription	Brain Anterior Caudate	brain
4	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
5	chr5:124217000-124218800	Enhancers	Brain Hippocampus Middle	brain
6	chr5:124217000-124219000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:124217400-124218600	Weak transcription	Lung	lung
8	chr5:124217400-124219600	Weak transcription	Stomach Mucosa	stomach
9	chr5:124217400-124222200	Weak transcription	Brain Angular Gyrus	brain
10	chr5:124217600-124218200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:124217600-124218600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:124217600-124219600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:124217600-124219800	Weak transcription	Fetal Intestine Large	intestine
14	chr5:124217600-124223400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:124217800-124218800	Enhancers	Brain Substantia Nigra	brain
16	chr5:124217800-124219000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:124217800-124219000	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:124218000-124218200	Enhancers	Fetal Lung	lung
19	chr5:124218000-124218800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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