Variant report

Variant	rs6862717
Chromosome Location	chr5:147579666-147579667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56173148	1.00[AMR][1000 genomes]
rs56670217	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60111420	1.00[AMR][1000 genomes]
rs6890897	1.00[AMR][1000 genomes]
rs6895242	1.00[CEU][hapmap]
rs73276421	1.00[AMR][1000 genomes]
rs73278570	1.00[EUR][1000 genomes]
rs73795036	1.00[AMR][1000 genomes]
rs7724142	1.00[EUR][1000 genomes]
rs7726411	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv980947	chr5:147571596-147583858	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1845496	chr5:147576457-147586789	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147572200-147582000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:147573200-147584000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:147576000-147581000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:147576200-147581400	Weak transcription	NHEK	skin
5	chr5:147576600-147582400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:147578800-147579800	Enhancers	Fetal Intestine Large	intestine
7	chr5:147579200-147579800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:147579600-147583800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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