Variant report

Variant	rs6890897
Chromosome Location	chr5:147607383-147607384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56173148	1.00[AMR][1000 genomes]
rs56670217	1.00[AMR][1000 genomes]
rs60111420	1.00[AMR][1000 genomes]
rs6862717	1.00[AMR][1000 genomes]
rs73276421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276454	0.87[AFR][1000 genomes]
rs73795036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147605200-147608200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:147605800-147608400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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