Variant report

Variant	rs6864255
Chromosome Location	chr5:88868671-88868672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16867725	1.00[ASN][1000 genomes]
rs16867735	1.00[ASN][1000 genomes]
rs6875289	1.00[ASN][1000 genomes]
rs73770511	0.96[ASN][1000 genomes]
rs73772196	1.00[ASN][1000 genomes]
rs73772197	1.00[ASN][1000 genomes]
rs7703511	1.00[ASN][1000 genomes]
rs7709961	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88866800-88869200	Weak transcription	Brain Germinal Matrix	brain
2	chr5:88866800-88877000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:88867400-88872600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:88867600-88869600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:88868600-88868800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:88868600-88869400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:88868600-88869400	Enhancers	Esophagus	oesophagus
8	chr5:88868600-88869400	Enhancers	Fetal Lung	lung
9	chr5:88868600-88869400	Enhancers	Psoas Muscle	Psoas
10	chr5:88868600-88869400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr5:88868600-88869400	Enhancers	NHLF	lung
12	chr5:88868600-88869600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:88868600-88869600	Enhancers	Brain Anterior Caudate	brain
14	chr5:88868600-88869600	Enhancers	Brain Substantia Nigra	brain
15	chr5:88868600-88869800	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links