Variant report

Variant	rs73770511
Chromosome Location	chr5:88879135-88879136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16867725	0.96[ASN][1000 genomes]
rs16867735	0.96[ASN][1000 genomes]
rs55854004	1.00[AMR][1000 genomes]
rs55902001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56061131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59135582	1.00[AMR][1000 genomes]
rs59784242	1.00[AMR][1000 genomes]
rs6452822	1.00[AMR][1000 genomes]
rs6864255	0.96[ASN][1000 genomes]
rs6875289	0.96[ASN][1000 genomes]
rs6898669	1.00[AMR][1000 genomes]
rs73770507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772153	1.00[AMR][1000 genomes]
rs73772160	1.00[AMR][1000 genomes]
rs73772161	1.00[AMR][1000 genomes]
rs73772165	1.00[AMR][1000 genomes]
rs73772166	1.00[AMR][1000 genomes]
rs73772194	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772196	0.96[ASN][1000 genomes]
rs73772197	0.96[ASN][1000 genomes]
rs73772198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772202	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703511	0.96[ASN][1000 genomes]
rs7709961	0.96[ASN][1000 genomes]
rs7713191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88878200-88881000	Enhancers	HMEC	breast
2	chr5:88878400-88881000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:88878600-88881000	Enhancers	NHEK	skin
4	chr5:88878600-88881200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:88878800-88879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:88878800-88880200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:88878800-88881200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:88879000-88880000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:88879000-88880000	Weak transcription	NHDF-Ad	bronchial
10	chr5:88879000-88880000	Weak transcription	NHLF	lung
11	chr5:88879000-88881000	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links