Variant report

Variant	rs6865934
Chromosome Location	chr5:91091485-91091486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1366129	0.86[ASN][1000 genomes]
rs1863948	0.83[ASN][1000 genomes]
rs1863949	0.86[ASN][1000 genomes]
rs1863950	0.86[ASN][1000 genomes]
rs2367826	0.84[ASN][1000 genomes]
rs2367828	0.84[ASN][1000 genomes]
rs2367829	0.84[ASN][1000 genomes]
rs2860382	0.86[ASN][1000 genomes]
rs2887093	0.84[ASN][1000 genomes]
rs2887094	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913415	0.85[ASN][1000 genomes]
rs2913416	0.84[ASN][1000 genomes]
rs2913417	0.85[ASN][1000 genomes]
rs2913418	0.85[ASN][1000 genomes]
rs2913419	0.85[ASN][1000 genomes]
rs2913420	0.84[ASN][1000 genomes]
rs2913421	0.84[ASN][1000 genomes]
rs2913440	0.84[ASN][1000 genomes]
rs2913442	0.84[ASN][1000 genomes]
rs2913443	0.84[ASN][1000 genomes]
rs2913447	0.86[ASN][1000 genomes]
rs2913448	0.86[ASN][1000 genomes]
rs2913449	0.86[ASN][1000 genomes]
rs2913450	0.86[ASN][1000 genomes]
rs2913451	0.86[ASN][1000 genomes]
rs2913452	0.87[ASN][1000 genomes]
rs2973853	0.85[ASN][1000 genomes]
rs2973854	0.84[ASN][1000 genomes]
rs2973855	0.83[ASN][1000 genomes]
rs2973856	0.85[ASN][1000 genomes]
rs2973863	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2973864	0.86[ASN][1000 genomes]
rs2973865	0.86[ASN][1000 genomes]
rs2973866	0.87[ASN][1000 genomes]
rs2973867	0.87[ASN][1000 genomes]
rs4270726	0.88[ASN][1000 genomes]
rs4397159	0.88[ASN][1000 genomes]
rs4398667	0.88[ASN][1000 genomes]
rs7442905	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9293576	0.88[ASN][1000 genomes]
rs9293577	0.88[ASN][1000 genomes]
rs930050	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs930051	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830394	chr5:90944049-91107749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv830395	chr5:90955521-91135272	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv882371	chr5:91018052-91092920	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91084200-91093200	Weak transcription	Hela-S3	cervix
2	chr5:91091200-91092000	Enhancers	A549	lung

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