Variant report

Variant	rs7442905
Chromosome Location	chr5:91090852-91090853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10039554	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10045304	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244209	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4288147	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4400158	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4443452	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469220	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4509055	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4568393	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4628022	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4916875	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56370675	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66497055	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865934	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6889498	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9293575	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830394	chr5:90944049-91107749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv830395	chr5:90955521-91135272	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv882371	chr5:91018052-91092920	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7442905	GPR150	cis	cerebellum	SCAN
rs7442905	C5orf36	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91084200-91093200	Weak transcription	Hela-S3	cervix
2	chr5:91090800-91091200	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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