Variant report

Variant	rs6867742
Chromosome Location	chr5:145156938-145156939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10045839	1.00[EUR][1000 genomes]
rs10515560	1.00[EUR][1000 genomes]
rs11956768	1.00[MEX][hapmap]
rs17103704	1.00[EUR][1000 genomes]
rs17103722	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2116746	1.00[EUR][1000 genomes]
rs2163753	1.00[EUR][1000 genomes]
rs338890	1.00[ASN][1000 genomes]
rs4304121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6893794	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6893873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145111400-145166800	Weak transcription	K562	blood
4	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
5	chr5:145138000-145157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:145139000-145165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:145140000-145157800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:145140400-145157200	Weak transcription	Left Ventricle	heart
9	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:145142400-145162400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:145147400-145157000	Weak transcription	Fetal Stomach	stomach
12	chr5:145147400-145161800	Weak transcription	Lung	lung
13	chr5:145148800-145166600	Weak transcription	Fetal Heart	heart
14	chr5:145152000-145167200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:145152200-145171000	Weak transcription	Stomach Mucosa	stomach
16	chr5:145153800-145157200	Enhancers	Hela-S3	cervix
17	chr5:145154200-145157200	Enhancers	HSMMtube	muscle
18	chr5:145154200-145157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:145154400-145157000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:145154400-145157400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:145154400-145159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:145154600-145157000	Enhancers	Osteobl	bone
23	chr5:145154600-145157200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:145154600-145157800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:145154600-145166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:145154600-145169600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:145154800-145157200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:145154800-145157200	Enhancers	Adipose Nuclei	Adipose
29	chr5:145155000-145157000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:145155000-145157000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:145155000-145157000	Enhancers	HSMM	muscle
32	chr5:145155000-145157000	Enhancers	NH-A	brain
33	chr5:145155000-145157200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:145155000-145157400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:145155000-145157400	Enhancers	HMEC	breast
36	chr5:145155000-145158800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr5:145155200-145157000	Enhancers	HepG2	liver
38	chr5:145155200-145157200	Enhancers	NHLF	lung
39	chr5:145155400-145157400	Weak transcription	Fetal Intestine Large	intestine
40	chr5:145155400-145167200	Weak transcription	Right Atrium	heart
41	chr5:145155600-145157000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:145155600-145157200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:145155600-145157200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:145155600-145157400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:145156000-145160400	Weak transcription	Brain Substantia Nigra	brain
46	chr5:145156000-145171400	Weak transcription	Aorta	Aorta
47	chr5:145156200-145157600	Enhancers	Placenta Amnion	Placenta Amnion
48	chr5:145156200-145160600	Weak transcription	Brain Hippocampus Middle	brain
49	chr5:145156400-145157200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:145156400-145157400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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