Variant report

Variant	rs686899
Chromosome Location	chr6:69784494-69784495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1336634	0.80[AFR][1000 genomes]
rs1384246	0.87[AFR][1000 genomes]
rs1384247	0.82[AFR][1000 genomes]
rs2005033	0.84[ASN][1000 genomes]
rs2128290	0.84[AFR][1000 genomes]
rs2170508	0.86[AFR][1000 genomes]
rs2170509	0.84[AFR][1000 genomes]
rs3799028	0.85[AFR][1000 genomes]
rs4706857	0.82[AFR][1000 genomes]
rs570181	0.85[AFR][1000 genomes]
rs6930865	0.85[AFR][1000 genomes]
rs7739849	0.85[AFR][1000 genomes]
rs7756358	0.85[AFR][1000 genomes]
rs9342740	0.84[AFR][1000 genomes]
rs9346261	0.85[AFR][1000 genomes]
rs9360371	0.84[AFR][1000 genomes]
rs9360372	0.85[AFR][1000 genomes]
rs9454687	0.84[AFR][1000 genomes]
rs9454695	0.82[AFR][1000 genomes]
rs994380	0.84[AFR][1000 genomes]
rs994381	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69784400-69784600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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