Variant report

Variant	rs6869666
Chromosome Location	chr5:151252032-151252033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10062169	0.81[ASN][1000 genomes]
rs1428159	0.81[ASN][1000 genomes]
rs1428160	0.81[ASN][1000 genomes]
rs2913881	0.81[ASN][1000 genomes]
rs2913888	0.81[ASN][1000 genomes]
rs2913889	0.81[ASN][1000 genomes]
rs2913892	0.81[ASN][1000 genomes]
rs2913893	0.81[ASN][1000 genomes]
rs2964601	0.81[ASN][1000 genomes]
rs2964603	0.81[ASN][1000 genomes]
rs2964604	0.81[ASN][1000 genomes]
rs2964606	0.81[ASN][1000 genomes]
rs4259159	0.81[ASN][1000 genomes]
rs4478307	0.81[ASN][1000 genomes]
rs72802240	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808837	chr5:151238149-151260215	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1807514	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1807896	chr5:151242208-151252867	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1808791	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1808872	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3487128	chr5:151247859-151254357	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3471109	chr5:151248159-151252657	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3487127	chr5:151248309-151254207	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3487129	chr5:151248309-151254207	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv11199	chr5:151249350-151252921	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv1805240	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv1807490	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv1808128	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv1811714	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv1812706	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv1813297	chr5:151249408-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3471110	chr5:151249859-151252657	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3471107	chr5:151249859-151254957	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv1805196	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv1806540	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv1808206	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv1809796	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv1810176	chr5:151250248-151252867	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv1811127	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv1811556	chr5:151250248-151252867	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv1813291	chr5:151250248-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv600039	chr5:151250731-151252867	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151235200-151264200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151250000-151252200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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