Variant report

Variant	rs2964601
Chromosome Location	chr5:151260860-151260861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10044368	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10050657	0.94[ASN][1000 genomes]
rs10062169	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065313	0.83[ASN][1000 genomes]
rs10075101	0.80[EUR][1000 genomes]
rs10078632	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10079787	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1042877	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs10463320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10476776	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10476778	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1062177	0.87[CHB][hapmap]
rs11167557	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11167559	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11954338	0.82[EUR][1000 genomes]
rs12108921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12109022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12109585	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12518238	0.84[ASN][1000 genomes]
rs12518722	0.80[ASN][1000 genomes]
rs12653926	0.84[ASN][1000 genomes]
rs12658422	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1366238	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1428159	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428160	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433041	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1549920	0.87[CHB][hapmap]
rs17741826	0.87[CHB][hapmap]
rs2033212	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2347597	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2913878	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913879	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913881	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913882	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2913888	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913892	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913893	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915822	0.87[CHB][hapmap]
rs2915826	0.87[CHB][hapmap]
rs2915827	0.87[CHB][hapmap]
rs2915868	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2915872	0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap]
rs2915876	0.87[CHB][hapmap]
rs2915878	0.87[CHB][hapmap]
rs2915879	0.87[CHB][hapmap]
rs2915880	0.87[CHB][hapmap]
rs2915885	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915886	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2915888	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2915890	0.95[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2915891	0.80[EUR][1000 genomes]
rs2915892	0.80[EUR][1000 genomes]
rs2915893	0.80[EUR][1000 genomes]
rs2915894	0.80[EUR][1000 genomes]
rs2964570	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2964574	0.87[CHB][hapmap]
rs2964584	0.87[CHB][hapmap]
rs2964587	0.87[CHB][hapmap]
rs2964591	0.87[CHB][hapmap]
rs2964592	0.87[CHB][hapmap]
rs2964596	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2964597	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964599	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964603	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964604	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964606	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964610	0.81[EUR][1000 genomes]
rs2964611	0.80[EUR][1000 genomes]
rs2964613	0.80[EUR][1000 genomes]
rs35692301	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4075273	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4076138	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4259159	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331885	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4360031	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4362933	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4379180	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4419575	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4472253	0.80[EUR][1000 genomes]
rs4478307	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510568	0.82[EUR][1000 genomes]
rs4541649	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4555782	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4571461	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4594844	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4629583	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4629586	0.80[EUR][1000 genomes]
rs62394144	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62394146	0.80[ASN][1000 genomes]
rs62394155	0.84[ASN][1000 genomes]
rs6579897	0.87[CHB][hapmap]
rs6579906	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6579908	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6579909	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6579910	0.82[ASN][1000 genomes]
rs6863833	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6863837	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6868371	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6869666	0.81[ASN][1000 genomes]
rs6870491	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877199	0.83[AFR][1000 genomes]
rs6878691	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6892117	0.95[ASN][1000 genomes]
rs6896518	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6896664	0.95[ASN][1000 genomes]
rs72802219	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7341167	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7702751	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7711609	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7711771	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7712779	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7715874	0.80[EUR][1000 genomes]
rs7719617	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs7720579	0.80[EUR][1000 genomes]
rs7725327	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7728956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7729026	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7733241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7734314	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7735811	0.81[ASN][1000 genomes]
rs892006	0.87[CHB][hapmap]
rs9324712	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9324714	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2964601	C5orf46	cis	parietal	SCAN
rs2964601	SYNPO	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151235200-151264200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151259800-151261000	Enhancers	Fetal Muscle Leg	muscle
3	chr5:151260200-151261200	Weak transcription	Psoas Muscle	Psoas
4	chr5:151260200-151261400	Weak transcription	Aorta	Aorta
5	chr5:151260600-151261600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:151260800-151261600	Enhancers	Left Ventricle	heart
7	chr5:151260800-151265200	Enhancers	Fetal Heart	heart

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