Variant report

Variant	rs6877199
Chromosome Location	chr5:151274117-151274118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1366236	0.83[AFR][1000 genomes]
rs2071220	0.92[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2071221	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2913879	0.86[AFR][1000 genomes]
rs2964601	0.83[AFR][1000 genomes]
rs4467698	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958283	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7349787	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708145	0.93[EUR][1000 genomes]
rs7712434	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7729457	0.81[CHB][hapmap];0.88[CHD][hapmap];0.93[TSI][hapmap]
rs991738	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6877199	C5orf46	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151265200-151275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151266800-151275200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:151267200-151275200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:151269600-151275600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:151270600-151275200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:151270800-151275200	Weak transcription	Left Ventricle	heart
7	chr5:151271000-151280400	Weak transcription	Fetal Heart	heart
8	chr5:151272400-151275400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:151273800-151275000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:151274000-151275200	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links