Variant report

Variant	rs1366236
Chromosome Location	chr5:151284603-151284604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2071220	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs2071221	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2913888	0.80[AFR][1000 genomes]
rs2913889	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs2964597	0.80[AFR][1000 genomes]
rs2964606	0.80[AFR][1000 genomes]
rs4958283	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6877199	0.83[AFR][1000 genomes]
rs72802240	0.86[ASN][1000 genomes]
rs7708145	0.88[ASN][1000 genomes]
rs7712434	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7729457	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs991738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151276400-151285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:151276600-151285200	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:151278600-151286000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:151279600-151285200	Weak transcription	HSMM	muscle
5	chr5:151280800-151285400	Enhancers	GM12878-XiMat	blood
6	chr5:151281000-151285200	Weak transcription	Aorta	Aorta
7	chr5:151281400-151285200	Weak transcription	NHDF-Ad	bronchial
8	chr5:151283200-151286000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:151283400-151286200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr5:151284400-151285000	Enhancers	Fetal Kidney	kidney
11	chr5:151284400-151285600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:151284400-151286000	Bivalent Enhancer	Fetal Brain Female	brain
13	chr5:151284400-151286200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:151284400-151286200	Enhancers	NH-A	brain
15	chr5:151284400-151286400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:151284400-151286600	Enhancers	Fetal Lung	lung
17	chr5:151284600-151285000	Weak transcription	HSMMtube	muscle
18	chr5:151284600-151285200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links