Variant report

Variant	rs991738
Chromosome Location	chr5:151298449-151298450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1366236	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs153959	0.81[ASN][1000 genomes]
rs2071220	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2071221	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3749653	0.83[ASN][1000 genomes]
rs413317	0.82[ASN][1000 genomes]
rs422192	0.83[ASN][1000 genomes]
rs445656	0.82[ASN][1000 genomes]
rs4467698	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4958283	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877199	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72802240	0.89[ASN][1000 genomes]
rs7349787	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7708145	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7712434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7729457	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs991738	C5orf46	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151294400-151299200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151297200-151298600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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