Variant report

Variant	rs7708145
Chromosome Location	chr5:151302967-151302968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1366236	0.88[ASN][1000 genomes]
rs2071220	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2071221	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs302411	0.81[ASN][1000 genomes]
rs4467698	0.92[EUR][1000 genomes]
rs4958283	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877199	0.93[EUR][1000 genomes]
rs72802240	0.84[ASN][1000 genomes]
rs7349787	0.93[EUR][1000 genomes]
rs7712434	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7729457	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs991738	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151299200-151305800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:151302400-151303600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:151302600-151303400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:151302800-151303200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links