Variant report

Variant	rs4467698
Chromosome Location	chr5:151270122-151270123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2071220	0.92[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs2071221	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2913879	0.83[AFR][1000 genomes]
rs4958283	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6877199	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349787	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708145	0.92[EUR][1000 genomes]
rs7712434	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7729457	0.81[CHB][hapmap];0.88[CHD][hapmap];0.93[TSI][hapmap]
rs991738	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4467698	C5orf46	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151265200-151275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151266800-151275200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:151267200-151275200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:151268400-151271000	Enhancers	Fetal Heart	heart
5	chr5:151268400-151272400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:151269000-151270800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:151269200-151273800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:151269400-151270600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:151269600-151275600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:151269800-151270800	Enhancers	Right Ventricle	heart
11	chr5:151270000-151270800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:151270000-151270800	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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