Variant report

Variant	rs6896664
Chromosome Location	chr5:151265274-151265275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10050657	0.89[ASN][1000 genomes]
rs10062169	0.95[ASN][1000 genomes]
rs10078632	0.92[ASN][1000 genomes]
rs10079787	0.92[ASN][1000 genomes]
rs10463320	0.91[ASN][1000 genomes]
rs11167557	0.86[ASN][1000 genomes]
rs11167559	0.93[ASN][1000 genomes]
rs12108921	0.92[ASN][1000 genomes]
rs12109022	0.92[ASN][1000 genomes]
rs12109585	0.92[ASN][1000 genomes]
rs12515762	0.82[EUR][1000 genomes]
rs12518238	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12518722	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653926	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654573	0.80[EUR][1000 genomes]
rs12658422	0.82[ASN][1000 genomes]
rs1346489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1366238	0.94[ASN][1000 genomes]
rs1428159	0.95[ASN][1000 genomes]
rs1428160	0.95[ASN][1000 genomes]
rs1549622	0.92[EUR][1000 genomes]
rs17804178	0.80[EUR][1000 genomes]
rs2033212	0.97[ASN][1000 genomes]
rs2913878	0.92[ASN][1000 genomes]
rs2913879	0.97[ASN][1000 genomes]
rs2913881	0.95[ASN][1000 genomes]
rs2913882	0.91[ASN][1000 genomes]
rs2913888	0.95[ASN][1000 genomes]
rs2913889	0.95[ASN][1000 genomes]
rs2913892	0.95[ASN][1000 genomes]
rs2913893	0.95[ASN][1000 genomes]
rs2913894	0.91[ASN][1000 genomes]
rs2964596	0.89[ASN][1000 genomes]
rs2964597	0.97[ASN][1000 genomes]
rs2964599	0.91[ASN][1000 genomes]
rs2964601	0.95[ASN][1000 genomes]
rs2964603	0.95[ASN][1000 genomes]
rs2964604	0.95[ASN][1000 genomes]
rs2964606	0.95[ASN][1000 genomes]
rs2964612	0.80[EUR][1000 genomes]
rs35692301	0.82[ASN][1000 genomes]
rs4075273	0.92[ASN][1000 genomes]
rs4076138	0.92[ASN][1000 genomes]
rs4259159	0.95[ASN][1000 genomes]
rs4331885	0.91[ASN][1000 genomes]
rs4362933	0.80[ASN][1000 genomes]
rs4379180	0.80[ASN][1000 genomes]
rs4478307	0.95[ASN][1000 genomes]
rs4555782	0.80[ASN][1000 genomes]
rs4594844	0.80[ASN][1000 genomes]
rs59580263	0.98[EUR][1000 genomes]
rs62377945	0.82[EUR][1000 genomes]
rs62394144	0.82[ASN][1000 genomes]
rs62394146	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394155	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62395861	0.98[EUR][1000 genomes]
rs6579909	0.80[ASN][1000 genomes]
rs6863833	0.86[ASN][1000 genomes]
rs6863837	0.86[ASN][1000 genomes]
rs6868371	0.92[ASN][1000 genomes]
rs6870491	0.91[ASN][1000 genomes]
rs6878691	0.92[ASN][1000 genomes]
rs6884630	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6892117	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896518	0.92[ASN][1000 genomes]
rs72802219	0.88[ASN][1000 genomes]
rs7341167	0.86[ASN][1000 genomes]
rs7702751	0.86[ASN][1000 genomes]
rs7711609	0.92[ASN][1000 genomes]
rs7711771	0.92[ASN][1000 genomes]
rs7712779	0.94[ASN][1000 genomes]
rs7725327	0.92[ASN][1000 genomes]
rs7728956	0.93[ASN][1000 genomes]
rs7729026	0.93[ASN][1000 genomes]
rs919262	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs919263	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9324712	0.92[ASN][1000 genomes]
rs9324714	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6896664	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs6896664	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151264400-151265400	Enhancers	GM12878-XiMat	blood
2	chr5:151264600-151266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:151265000-151265400	Enhancers	Fetal Brain Male	brain
4	chr5:151265200-151266200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:151265200-151266200	Weak transcription	Gastric	stomach
6	chr5:151265200-151268400	Weak transcription	Fetal Heart	heart
7	chr5:151265200-151275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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