Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151267618..151270050-chr5:151273680..151275598,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1062177	0.81[EUR][1000 genomes]
rs12515762	0.84[EUR][1000 genomes]
rs12518238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12518722	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12653926	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12654573	0.82[EUR][1000 genomes]
rs1346489	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1428155	0.88[ASN][1000 genomes]
rs1428158	0.88[ASN][1000 genomes]
rs1465555	0.88[ASN][1000 genomes]
rs1549622	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17804178	0.82[EUR][1000 genomes]
rs2913884	0.91[ASN][1000 genomes]
rs2913885	0.88[ASN][1000 genomes]
rs2915887	0.81[EUR][1000 genomes]
rs2964565	0.98[ASN][1000 genomes]
rs2964607	0.88[ASN][1000 genomes]
rs2964608	0.86[ASN][1000 genomes]
rs2964612	0.82[EUR][1000 genomes]
rs4279329	0.88[ASN][1000 genomes]
rs4302572	0.88[ASN][1000 genomes]
rs59580263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62377945	0.84[EUR][1000 genomes]
rs62394146	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62394155	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6884630	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6892117	0.98[EUR][1000 genomes]
rs6896664	0.98[EUR][1000 genomes]
rs919262	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs919263	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs973529	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62395861	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs62395861	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151265200-151275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151266800-151275200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:151267200-151275200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:151268400-151271000	Enhancers	Fetal Heart	heart
5	chr5:151268400-151272400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:151268800-151269400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:151269000-151269600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:151269000-151270800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:151269200-151269400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:151269200-151273800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: