Variant report

Variant	rs2913885
Chromosome Location	chr5:151281000-151281001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151275299..151277961-chr5:151280743..151282793,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1346489	0.82[ASN][1000 genomes]
rs1428155	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1428157	0.82[CHB][hapmap]
rs1428158	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465555	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549619	0.90[ASN][1000 genomes]
rs1549620	0.90[ASN][1000 genomes]
rs1549622	0.87[ASN][1000 genomes]
rs167321	0.87[ASN][1000 genomes]
rs177349	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs182488	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs186217	0.80[CHB][hapmap]
rs188553	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188554	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2584895	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913884	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2964565	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2964607	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964608	0.84[ASN][1000 genomes]
rs302392	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302395	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302396	0.83[JPT][hapmap]
rs302397	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279329	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428264	0.82[ASN][1000 genomes]
rs4302572	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59580263	0.86[ASN][1000 genomes]
rs62395861	0.88[ASN][1000 genomes]
rs6579913	0.91[ASN][1000 genomes]
rs6884630	0.82[ASN][1000 genomes]
rs7729457	0.81[JPT][hapmap]
rs919260	0.86[ASN][1000 genomes]
rs919262	0.82[ASN][1000 genomes]
rs919263	0.81[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151275000-151281400	Enhancers	NHDF-Ad	bronchial
2	chr5:151276400-151285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:151276600-151285200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:151276800-151284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:151276800-151284400	Weak transcription	NH-A	brain
6	chr5:151278600-151286000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:151279200-151282800	Enhancers	Fetal Lung	lung
8	chr5:151279600-151281000	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:151279600-151285200	Weak transcription	HSMM	muscle
10	chr5:151279800-151281000	Enhancers	Fetal Stomach	stomach
11	chr5:151279800-151281600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:151280000-151281000	Enhancers	HSMMtube	muscle
13	chr5:151280200-151281000	Enhancers	Ovary	ovary
14	chr5:151280200-151281200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:151280200-151281200	Enhancers	Colon Smooth Muscle	Colon
16	chr5:151280400-151281000	Enhancers	Fetal Heart	heart
17	chr5:151280600-151281000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:151280600-151281000	Enhancers	Adipose Nuclei	Adipose
19	chr5:151280800-151281000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr5:151280800-151281000	Enhancers	Aorta	Aorta
21	chr5:151280800-151281000	Enhancers	Left Ventricle	heart
22	chr5:151280800-151285400	Enhancers	GM12878-XiMat	blood
23	chr5:151281000-151284000	Weak transcription	Fetal Stomach	stomach
24	chr5:151281000-151284400	Weak transcription	HSMMtube	muscle
25	chr5:151281000-151285200	Weak transcription	Aorta	Aorta

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