Variant report

Variant	rs2964607
Chromosome Location	chr5:151280408-151280409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1062177	1.00[YRI][hapmap]
rs1346489	0.82[ASN][1000 genomes]
rs1428155	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1428157	0.81[CHB][hapmap]
rs1428158	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465555	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549619	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549620	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549622	0.87[ASN][1000 genomes]
rs1549920	1.00[YRI][hapmap]
rs167321	0.87[ASN][1000 genomes]
rs177349	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17741826	1.00[YRI][hapmap]
rs182488	0.89[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs186217	0.80[CHB][hapmap]
rs188553	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188554	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2584895	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913884	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2913885	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915822	1.00[YRI][hapmap]
rs2915826	1.00[YRI][hapmap]
rs2915827	1.00[YRI][hapmap]
rs2915876	1.00[YRI][hapmap]
rs2964565	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2964587	1.00[YRI][hapmap]
rs2964608	0.84[ASN][1000 genomes]
rs302392	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302395	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302396	0.83[JPT][hapmap]
rs302397	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279329	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428264	0.82[ASN][1000 genomes]
rs4302572	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59580263	0.86[ASN][1000 genomes]
rs62395861	0.88[ASN][1000 genomes]
rs6579913	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6884630	0.82[ASN][1000 genomes]
rs7729457	0.81[JPT][hapmap]
rs919260	0.86[ASN][1000 genomes]
rs919262	0.82[ASN][1000 genomes]
rs919263	0.81[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151275000-151281400	Enhancers	NHDF-Ad	bronchial
2	chr5:151275800-151280800	Weak transcription	Left Ventricle	heart
3	chr5:151276400-151285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:151276600-151285200	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:151276800-151284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:151276800-151284400	Weak transcription	NH-A	brain
7	chr5:151277800-151280600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:151278600-151286000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:151279200-151282800	Enhancers	Fetal Lung	lung
10	chr5:151279600-151281000	Enhancers	Stomach Smooth Muscle	stomach
11	chr5:151279600-151285200	Weak transcription	HSMM	muscle
12	chr5:151279800-151281000	Enhancers	Fetal Stomach	stomach
13	chr5:151279800-151281600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:151280000-151281000	Enhancers	HSMMtube	muscle
15	chr5:151280200-151281000	Enhancers	Ovary	ovary
16	chr5:151280200-151281200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:151280200-151281200	Enhancers	Colon Smooth Muscle	Colon
18	chr5:151280400-151280800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:151280400-151280800	Weak transcription	Aorta	Aorta
20	chr5:151280400-151281000	Enhancers	Fetal Heart	heart

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