Variant report

Variant	rs4302572
Chromosome Location	chr5:151286125-151286126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1346489	0.82[ASN][1000 genomes]
rs1428155	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1428157	0.82[CHB][hapmap]
rs1428158	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465555	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549619	0.90[ASN][1000 genomes]
rs1549620	0.90[ASN][1000 genomes]
rs1549622	0.87[ASN][1000 genomes]
rs167321	0.87[ASN][1000 genomes]
rs177349	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs182488	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs186217	0.80[CHB][hapmap]
rs188553	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188554	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2584895	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913884	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2913885	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964565	0.89[ASN][1000 genomes]
rs2964607	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964608	0.84[ASN][1000 genomes]
rs302392	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302395	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302396	0.83[JPT][hapmap]
rs302397	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279329	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428264	0.82[ASN][1000 genomes]
rs59580263	0.86[ASN][1000 genomes]
rs62395861	0.88[ASN][1000 genomes]
rs6579913	0.91[ASN][1000 genomes]
rs6884630	0.82[ASN][1000 genomes]
rs7729457	0.81[JPT][hapmap]
rs919260	0.86[ASN][1000 genomes]
rs919262	0.82[ASN][1000 genomes]
rs919263	0.81[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151283400-151286200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
2	chr5:151284400-151286200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:151284400-151286200	Enhancers	NH-A	brain
4	chr5:151284400-151286400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:151284400-151286600	Enhancers	Fetal Lung	lung
6	chr5:151285000-151286200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:151285000-151286200	Weak transcription	Fetal Kidney	kidney
8	chr5:151285000-151286600	Enhancers	HSMMtube	muscle
9	chr5:151285200-151286600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:151285400-151286200	Enhancers	Adipose Nuclei	Adipose
11	chr5:151285400-151286400	Enhancers	HMEC	breast
12	chr5:151285600-151286200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr5:151285600-151289000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:151285800-151286200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:151285800-151286600	Enhancers	Aorta	Aorta
16	chr5:151285800-151286600	Enhancers	HSMM	muscle
17	chr5:151286000-151286200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr5:151286000-151290200	Weak transcription	NHEK	skin
19	chr5:151286000-151290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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