Variant report

Variant	rs1428158
Chromosome Location	chr5:151294581-151294582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1062177	1.00[YRI][hapmap]
rs1346489	0.82[ASN][1000 genomes]
rs1428155	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1465555	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549619	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549620	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549622	0.87[ASN][1000 genomes]
rs1549920	1.00[YRI][hapmap]
rs167321	0.87[ASN][1000 genomes]
rs177349	0.81[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17741826	1.00[YRI][hapmap]
rs182488	0.84[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs188553	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188554	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2584895	0.81[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913884	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2913885	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915822	1.00[YRI][hapmap]
rs2915826	1.00[YRI][hapmap]
rs2915827	1.00[YRI][hapmap]
rs2915876	1.00[YRI][hapmap]
rs2964565	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2964587	1.00[YRI][hapmap]
rs2964607	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964608	0.84[ASN][1000 genomes]
rs302392	0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302395	0.87[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302397	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.82[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279329	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428264	0.82[ASN][1000 genomes]
rs4302572	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59580263	0.86[ASN][1000 genomes]
rs62395861	0.88[ASN][1000 genomes]
rs6579913	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6884630	0.82[ASN][1000 genomes]
rs919260	0.86[ASN][1000 genomes]
rs919262	0.82[ASN][1000 genomes]
rs919263	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151292000-151294600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:151292800-151297200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:151294400-151297200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151294400-151297200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:151294400-151299200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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