Variant report

Variant	rs188553
Chromosome Location	chr5:151328259-151328260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1062177	1.00[YRI][hapmap]
rs1428155	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1428157	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs1428158	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1465555	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1549619	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1549620	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1549920	1.00[YRI][hapmap]
rs167321	1.00[ASN][1000 genomes]
rs169988	0.86[ASN][1000 genomes]
rs177349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs177350	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17741826	1.00[YRI][hapmap]
rs182488	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs186217	0.85[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs188554	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1981824	0.86[ASN][1000 genomes]
rs2584895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913884	0.84[ASN][1000 genomes]
rs2913885	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2915822	1.00[YRI][hapmap]
rs2915876	1.00[YRI][hapmap]
rs2964607	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302393	0.82[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs302394	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs302395	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302396	0.82[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs302397	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302400	0.81[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs302401	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs302402	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs302412	1.00[ASN][1000 genomes]
rs302413	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302414	1.00[ASN][1000 genomes]
rs302415	0.99[ASN][1000 genomes]
rs400545	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404794	0.86[ASN][1000 genomes]
rs4279329	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs428264	0.94[ASN][1000 genomes]
rs4302572	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs433211	0.86[ASN][1000 genomes]
rs6579913	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs919260	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart
2	chr5:151326400-151329000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:151326800-151330600	Enhancers	HMEC	breast
4	chr5:151327000-151328400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:151327200-151328400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:151327200-151330000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:151327400-151328400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:151327400-151328800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr5:151327400-151328800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:151327600-151328800	Weak transcription	HSMMtube	muscle
11	chr5:151327800-151335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:151328200-151329000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:151328200-151329800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:151328200-151331800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:151328200-151333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:151328200-151334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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