Variant report

Variant	rs188554
Chromosome Location	chr5:151339621-151339622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1062177	1.00[YRI][hapmap]
rs1428157	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs1428158	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1465555	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1549619	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1549620	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1549920	1.00[YRI][hapmap]
rs167321	0.87[ASN][1000 genomes]
rs169988	0.83[ASN][1000 genomes]
rs177349	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177350	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17741826	1.00[YRI][hapmap]
rs182488	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs186217	0.84[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs188553	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1981824	0.83[ASN][1000 genomes]
rs2584895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913885	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2915876	1.00[YRI][hapmap]
rs2964607	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs302392	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302393	0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs302394	0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs302395	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302396	0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs302397	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302400	0.80[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs302401	0.80[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs302402	0.80[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs302412	0.87[ASN][1000 genomes]
rs302413	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302414	0.87[ASN][1000 genomes]
rs302415	0.86[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs404794	0.83[ASN][1000 genomes]
rs4279329	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs428264	0.81[ASN][1000 genomes]
rs4302572	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs433211	0.83[ASN][1000 genomes]
rs6579913	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs919260	0.83[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151338800-151341400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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