Variant report

Variant	rs302394
Chromosome Location	chr5:151325257-151325258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151319178..151320732-chr5:151324965..151326478,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1428157	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1549619	0.86[ASN][1000 genomes]
rs1549620	0.86[ASN][1000 genomes]
rs167321	0.89[ASN][1000 genomes]
rs169988	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177349	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs177350	0.89[ASN][1000 genomes]
rs182488	0.89[ASN][1000 genomes]
rs186217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188553	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs188554	0.86[ASN][1000 genomes]
rs1981824	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2584895	0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs302392	0.82[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs302393	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302395	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs302396	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302397	0.89[ASN][1000 genomes]
rs302400	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs302401	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs302402	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs302412	0.89[ASN][1000 genomes]
rs302413	0.89[ASN][1000 genomes]
rs302414	0.89[ASN][1000 genomes]
rs302415	0.88[ASN][1000 genomes]
rs400545	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs404794	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs428264	0.95[ASN][1000 genomes]
rs433211	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6579913	0.85[ASN][1000 genomes]
rs919260	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart

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