Variant report

Variant	rs302412
Chromosome Location	chr5:151332812-151332813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1428155	0.87[ASN][1000 genomes]
rs1428157	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs1428158	0.87[ASN][1000 genomes]
rs1465555	0.87[ASN][1000 genomes]
rs1549619	0.97[ASN][1000 genomes]
rs1549620	0.97[ASN][1000 genomes]
rs167321	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169988	0.86[ASN][1000 genomes]
rs177349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs177350	1.00[ASN][1000 genomes]
rs182488	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186217	0.85[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs188553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs188554	0.87[ASN][1000 genomes]
rs1981824	0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs2584895	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2913884	0.84[ASN][1000 genomes]
rs2913885	0.87[ASN][1000 genomes]
rs2964607	0.87[ASN][1000 genomes]
rs302392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs302393	0.81[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs302394	0.81[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs302395	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs302396	0.81[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs302397	1.00[ASN][1000 genomes]
rs302400	0.80[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs302401	0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs302402	0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs302413	1.00[ASN][1000 genomes]
rs302414	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302415	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs400545	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs404794	0.86[ASN][1000 genomes]
rs4279329	0.87[ASN][1000 genomes]
rs428264	0.94[ASN][1000 genomes]
rs4302572	0.87[ASN][1000 genomes]
rs433211	0.86[ASN][1000 genomes]
rs6579913	0.96[ASN][1000 genomes]
rs919260	0.95[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151327800-151335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:151328200-151333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:151328200-151334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:151329800-151337400	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:151330600-151333000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:151330600-151333600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:151330600-151335000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:151330800-151333400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:151330800-151333800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:151332200-151333800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:151332600-151335200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:151332800-151335200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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