Variant report

Variant	rs1549619
Chromosome Location	chr5:151306890-151306891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1428155	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1428157	0.87[ASN][1000 genomes]
rs1428158	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1465555	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167321	0.97[ASN][1000 genomes]
rs169988	0.84[ASN][1000 genomes]
rs177349	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs177350	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs182488	0.97[ASN][1000 genomes]
rs186217	0.86[ASN][1000 genomes]
rs188553	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs188554	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1981824	0.84[ASN][1000 genomes]
rs2584895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2913884	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913885	0.90[ASN][1000 genomes]
rs2964565	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2964607	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs302392	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs302393	0.86[ASN][1000 genomes]
rs302394	0.86[ASN][1000 genomes]
rs302395	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs302396	0.86[ASN][1000 genomes]
rs302397	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs302400	0.91[ASN][1000 genomes]
rs302401	0.84[ASN][1000 genomes]
rs302402	0.84[ASN][1000 genomes]
rs302412	0.97[ASN][1000 genomes]
rs302413	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs302414	0.97[ASN][1000 genomes]
rs302415	0.96[ASN][1000 genomes]
rs400545	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs404794	0.83[ASN][1000 genomes]
rs4279329	0.90[ASN][1000 genomes]
rs428264	0.91[ASN][1000 genomes]
rs4302572	0.90[ASN][1000 genomes]
rs433211	0.84[ASN][1000 genomes]
rs6579913	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919260	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151305000-151307000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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