Variant report

Variant	rs167321
Chromosome Location	chr5:151330472-151330473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1428155	0.87[ASN][1000 genomes]
rs1428157	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs1428158	0.87[ASN][1000 genomes]
rs1465555	0.87[ASN][1000 genomes]
rs1549619	0.97[ASN][1000 genomes]
rs1549620	0.97[ASN][1000 genomes]
rs169988	0.86[ASN][1000 genomes]
rs177349	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs177350	1.00[ASN][1000 genomes]
rs182488	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186217	0.85[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs188553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs188554	0.87[ASN][1000 genomes]
rs1981824	0.86[ASN][1000 genomes]
rs2584895	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2913884	0.84[ASN][1000 genomes]
rs2913885	0.87[ASN][1000 genomes]
rs2964607	0.87[ASN][1000 genomes]
rs302392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs302393	0.82[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs302394	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs302395	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs302396	0.82[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs302397	1.00[ASN][1000 genomes]
rs302400	0.81[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs302401	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs302402	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs302412	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302413	1.00[ASN][1000 genomes]
rs302414	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302415	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs400545	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs404794	0.86[ASN][1000 genomes]
rs4279329	0.87[ASN][1000 genomes]
rs428264	0.94[ASN][1000 genomes]
rs4302572	0.87[ASN][1000 genomes]
rs433211	0.86[ASN][1000 genomes]
rs6579913	0.96[ASN][1000 genomes]
rs919260	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart
2	chr5:151326800-151330600	Enhancers	HMEC	breast
3	chr5:151327800-151335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151328200-151331800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:151328200-151333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:151328200-151334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:151328800-151330600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:151328800-151330800	Enhancers	HSMMtube	muscle
9	chr5:151329000-151330600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:151329200-151330600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr5:151329600-151330600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:151329800-151330600	Enhancers	Fetal Muscle Trunk	muscle
13	chr5:151329800-151330800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:151329800-151337400	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:151330000-151330600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:151330000-151332800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:151330200-151330600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:151330400-151330600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:151330400-151330600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr5:151330400-151330600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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