Variant report

Variant	rs2913884
Chromosome Location	chr5:151277143-151277144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151275299..151277961-chr5:151280743..151282793,2	K562	blood:
2	chr5:151275869..151278648-chr5:151283892..151285683,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1346489	0.85[ASN][1000 genomes]
rs1428155	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1428157	0.82[CHB][hapmap]
rs1428158	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1465555	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1549619	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1549620	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1549622	0.90[ASN][1000 genomes]
rs167321	0.84[ASN][1000 genomes]
rs177349	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs177350	0.84[ASN][1000 genomes]
rs182488	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs186217	0.80[CHB][hapmap]
rs188553	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2584895	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2913885	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2964565	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2964607	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2964608	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302392	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs302395	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs302396	0.83[JPT][hapmap]
rs302397	0.84[ASN][1000 genomes]
rs302400	0.84[JPT][hapmap]
rs302412	0.84[ASN][1000 genomes]
rs302413	0.84[ASN][1000 genomes]
rs302414	0.84[ASN][1000 genomes]
rs302415	0.84[ASN][1000 genomes]
rs400545	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4279329	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4302572	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59580263	0.89[ASN][1000 genomes]
rs62395861	0.91[ASN][1000 genomes]
rs6579913	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6884630	0.85[ASN][1000 genomes]
rs7729457	0.80[JPT][hapmap]
rs919260	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs919262	0.85[ASN][1000 genomes]
rs919263	0.84[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151271000-151280400	Weak transcription	Fetal Heart	heart
2	chr5:151275000-151278000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:151275000-151278200	Enhancers	HMEC	breast
4	chr5:151275000-151281400	Enhancers	NHDF-Ad	bronchial
5	chr5:151275200-151277800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:151275200-151278000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:151275400-151277600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:151275400-151277800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:151275800-151277200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:151275800-151277200	Weak transcription	NHLF	lung
11	chr5:151275800-151278000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:151275800-151278400	Enhancers	HSMM	muscle
13	chr5:151275800-151279000	Weak transcription	Right Atrium	heart
14	chr5:151275800-151280200	Weak transcription	Aorta	Aorta
15	chr5:151275800-151280800	Weak transcription	Left Ventricle	heart
16	chr5:151276000-151279800	Weak transcription	Fetal Stomach	stomach
17	chr5:151276000-151280200	Weak transcription	Ovary	ovary
18	chr5:151276200-151278000	Enhancers	NHEK	skin
19	chr5:151276200-151280200	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:151276400-151278600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:151276400-151285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:151276600-151279400	Weak transcription	HSMMtube	muscle
23	chr5:151276600-151279600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:151276600-151285200	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:151276800-151279200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:151276800-151284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:151276800-151284400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links