Variant report

Variant	rs1346489
Chromosome Location	chr5:151266534-151266535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151261376..151263246-chr5:151266263..151268549,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1062177	0.89[CEU][hapmap]
rs12515762	0.82[EUR][1000 genomes]
rs12518238	0.97[EUR][1000 genomes]
rs12518722	0.95[EUR][1000 genomes]
rs12653926	0.97[EUR][1000 genomes]
rs12654573	0.80[EUR][1000 genomes]
rs1428155	0.82[ASN][1000 genomes]
rs1428158	0.82[ASN][1000 genomes]
rs1465555	0.82[ASN][1000 genomes]
rs1549622	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549920	0.80[CEU][hapmap]
rs177349	0.84[CHB][hapmap]
rs17741826	0.90[CEU][hapmap]
rs17804178	0.80[EUR][1000 genomes]
rs188553	0.80[CHB][hapmap]
rs2913884	0.85[ASN][1000 genomes]
rs2913885	0.82[ASN][1000 genomes]
rs2915822	0.80[CEU][hapmap]
rs2915826	0.80[CEU][hapmap]
rs2915876	0.89[CEU][hapmap]
rs2915882	0.90[CEU][hapmap]
rs2964565	0.91[ASN][1000 genomes]
rs2964574	0.80[CEU][hapmap]
rs2964584	0.89[CEU][hapmap]
rs2964607	0.82[ASN][1000 genomes]
rs2964608	0.93[ASN][1000 genomes]
rs2964612	0.80[EUR][1000 genomes]
rs302395	0.80[CHB][hapmap]
rs4279329	0.82[ASN][1000 genomes]
rs4302572	0.82[ASN][1000 genomes]
rs59580263	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62377945	0.82[EUR][1000 genomes]
rs62394146	0.95[EUR][1000 genomes]
rs62394155	0.97[EUR][1000 genomes]
rs62395861	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6884630	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892117	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6896664	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs892006	0.89[CEU][hapmap]
rs919262	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919263	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1346489	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs1346489	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151264600-151266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151265200-151268400	Weak transcription	Fetal Heart	heart
3	chr5:151265200-151275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:151266200-151266600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:151266200-151266600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:151266200-151266600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:151266200-151266600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:151266200-151266800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:151266200-151266800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:151266200-151266800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:151266200-151266800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:151266400-151266600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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