Variant report

Variant	rs62394146
Chromosome Location	chr5:151233063-151233064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151150386..151152029-chr5:151232141..151234513,2	K562	blood:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10062169	0.80[ASN][1000 genomes]
rs10078632	0.84[ASN][1000 genomes]
rs10079787	0.84[ASN][1000 genomes]
rs10463320	0.84[ASN][1000 genomes]
rs1062177	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12108921	0.84[ASN][1000 genomes]
rs12109022	0.84[ASN][1000 genomes]
rs12109585	0.84[ASN][1000 genomes]
rs12515762	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12518238	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12518722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653926	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654573	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12658422	0.81[ASN][1000 genomes]
rs1346489	0.95[EUR][1000 genomes]
rs1428159	0.80[ASN][1000 genomes]
rs1428160	0.80[ASN][1000 genomes]
rs1549622	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1549920	0.86[AFR][1000 genomes]
rs17804178	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2016409	1.00[AFR][1000 genomes]
rs2347596	0.82[EUR][1000 genomes]
rs2913881	0.80[ASN][1000 genomes]
rs2913888	0.80[ASN][1000 genomes]
rs2913889	0.80[ASN][1000 genomes]
rs2913892	0.80[ASN][1000 genomes]
rs2913893	0.80[ASN][1000 genomes]
rs2913894	0.84[ASN][1000 genomes]
rs2915822	0.86[AFR][1000 genomes]
rs2915869	0.81[EUR][1000 genomes]
rs2915873	0.86[AFR][1000 genomes]
rs2915876	1.00[AFR][1000 genomes]
rs2915887	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2964571	0.81[EUR][1000 genomes]
rs2964578	1.00[AFR][1000 genomes]
rs2964585	1.00[AFR][1000 genomes]
rs2964599	0.84[ASN][1000 genomes]
rs2964601	0.80[ASN][1000 genomes]
rs2964603	0.80[ASN][1000 genomes]
rs2964604	0.80[ASN][1000 genomes]
rs2964606	0.80[ASN][1000 genomes]
rs2964612	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4075273	0.84[ASN][1000 genomes]
rs4076138	0.84[ASN][1000 genomes]
rs4259159	0.80[ASN][1000 genomes]
rs4331885	0.84[ASN][1000 genomes]
rs4478307	0.80[ASN][1000 genomes]
rs59580263	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62377931	1.00[AFR][1000 genomes]
rs62377945	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62394155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62395861	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6868371	0.84[ASN][1000 genomes]
rs6878691	0.84[ASN][1000 genomes]
rs6884630	0.96[EUR][1000 genomes]
rs6892117	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6896518	0.84[ASN][1000 genomes]
rs6896664	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72802204	0.82[EUR][1000 genomes]
rs72802219	0.87[ASN][1000 genomes]
rs7711609	0.84[ASN][1000 genomes]
rs7711771	0.84[ASN][1000 genomes]
rs7725327	0.84[ASN][1000 genomes]
rs7729026	0.82[ASN][1000 genomes]
rs892005	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs892006	0.82[EUR][1000 genomes]
rs919262	0.95[EUR][1000 genomes]
rs919263	0.95[EUR][1000 genomes]
rs9324712	0.84[ASN][1000 genomes]
rs9324714	0.84[ASN][1000 genomes]
rs973529	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62394146	RP11-54C4.1	cis	Nerve Tibial	GTEx
rs62394146	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151231200-151233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151231200-151242800	Weak transcription	Aorta	Aorta

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