Variant report

Variant	rs12658422
Chromosome Location	chr5:151228253-151228254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:182360575..182361332-chr5:151227897..151228897,3	MCF-7	breast:
2	chr1:182360867..182362429-chr5:151226919..151229896,2	K562	blood:
3	chr1:182359822..182362122-chr5:151226896..151229921,7	MCF-7	breast:
4	chr1:182360375..182361130-chr5:151227899..151228917,9	HCT-116	colon:

Variant related genes	Relation type
ENSG00000135821	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10044368	0.96[EUR][1000 genomes]
rs10050657	0.83[ASN][1000 genomes]
rs10058885	0.84[AFR][1000 genomes]
rs10062169	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10065313	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10075101	0.96[EUR][1000 genomes]
rs10078632	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10079787	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1042877	0.95[EUR][1000 genomes]
rs10463320	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10476776	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10476778	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11167557	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11167559	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11954338	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12108921	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12109022	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12109585	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12515762	0.81[ASN][1000 genomes]
rs12518722	0.81[ASN][1000 genomes]
rs12654573	0.81[ASN][1000 genomes]
rs12654877	0.94[EUR][1000 genomes]
rs1366238	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1428159	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1428160	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1433041	0.95[EUR][1000 genomes]
rs1978710	0.85[EUR][1000 genomes]
rs2033212	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2347597	0.95[EUR][1000 genomes]
rs2913878	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913879	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913881	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913882	0.83[ASN][1000 genomes]
rs2913888	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913889	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913892	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913893	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913894	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2915823	0.86[EUR][1000 genomes]
rs2915824	0.80[EUR][1000 genomes]
rs2915829	0.84[EUR][1000 genomes]
rs2915868	0.95[EUR][1000 genomes]
rs2915870	0.85[EUR][1000 genomes]
rs2915871	0.84[EUR][1000 genomes]
rs2915872	0.84[EUR][1000 genomes]
rs2915874	0.87[EUR][1000 genomes]
rs2915883	0.86[EUR][1000 genomes]
rs2915885	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2915886	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2915888	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2915890	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2915891	0.96[EUR][1000 genomes]
rs2915892	0.96[EUR][1000 genomes]
rs2915893	0.96[EUR][1000 genomes]
rs2915894	0.96[EUR][1000 genomes]
rs2964568	0.95[EUR][1000 genomes]
rs2964569	0.91[EUR][1000 genomes]
rs2964570	0.94[EUR][1000 genomes]
rs2964572	0.92[EUR][1000 genomes]
rs2964577	0.85[EUR][1000 genomes]
rs2964580	0.87[EUR][1000 genomes]
rs2964581	0.87[EUR][1000 genomes]
rs2964596	0.81[EUR][1000 genomes]
rs2964597	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2964599	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964601	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964603	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964604	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964606	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964610	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2964611	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2964613	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35692301	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4075273	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4076138	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4259159	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4331885	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4360031	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4362933	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4379180	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4419575	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4472253	0.96[EUR][1000 genomes]
rs4478307	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4510568	0.98[EUR][1000 genomes]
rs4541649	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4555782	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4571461	0.96[EUR][1000 genomes]
rs4594844	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4629583	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4629586	0.96[EUR][1000 genomes]
rs62394144	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62394146	0.81[ASN][1000 genomes]
rs6579906	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6579908	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6579909	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6579910	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6863833	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6863837	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868371	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6870491	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6878691	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6879461	0.95[EUR][1000 genomes]
rs6892117	0.82[ASN][1000 genomes]
rs6896518	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6896664	0.82[ASN][1000 genomes]
rs72802219	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7341167	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7702751	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7711609	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7711771	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7712779	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7715560	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7715874	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7720579	0.96[EUR][1000 genomes]
rs7725327	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7728956	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7729026	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7733241	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734314	0.95[EUR][1000 genomes]
rs7735811	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9324712	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324714	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151219400-151229800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151226800-151228600	Enhancers	Fetal Brain Male	brain

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