Variant report

Variant	rs2964577
Chromosome Location	chr5:151149448-151149449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151148547-151149867	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:151148376-151153894	K562	blood:	n/a	n/a
3	POLR2A	chr5:151149017-151153094	Hela-S3	cervix:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151141912..151146351-chr5:151146659..151152863,9	MCF-7	breast:
2	chr5:150861725..150863325-chr5:151147345..151150337,2	K562	blood:
3	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
4	chr19:2050333..2052576-chr5:151149365..151151441,2	K562	blood:
5	chr5:151146976..151149918-chr5:151242837..151245370,2	K562	blood:
6	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLRA1-1	chr5:151149191-151150353	NONHSAT104635

No data

Variant related genes	Relation type
G3BP1	TF binding region
ENSG00000213433	TF binding region
ENSG00000099875	Chromatin interaction
ENSG00000213433	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10044368	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10065313	0.85[EUR][1000 genomes]
rs10075101	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1042877	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10476776	0.88[EUR][1000 genomes]
rs10476778	0.86[EUR][1000 genomes]
rs11167557	0.85[EUR][1000 genomes]
rs11954338	0.87[EUR][1000 genomes]
rs12654877	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12658422	0.85[EUR][1000 genomes]
rs1433041	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549920	0.82[ASN][1000 genomes]
rs1549921	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17741826	0.85[ASN][1000 genomes]
rs1972780	0.80[ASN][1000 genomes]
rs1978710	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2016409	0.82[ASN][1000 genomes]
rs2347597	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915816	0.87[ASN][1000 genomes]
rs2915821	0.80[ASN][1000 genomes]
rs2915822	0.82[ASN][1000 genomes]
rs2915823	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915824	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915829	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915868	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915870	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915871	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915872	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915873	0.80[ASN][1000 genomes]
rs2915874	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915876	0.85[ASN][1000 genomes]
rs2915877	0.85[ASN][1000 genomes]
rs2915878	0.85[ASN][1000 genomes]
rs2915879	0.82[ASN][1000 genomes]
rs2915880	0.82[ASN][1000 genomes]
rs2915881	0.82[ASN][1000 genomes]
rs2915882	0.82[ASN][1000 genomes]
rs2915883	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915885	0.87[EUR][1000 genomes]
rs2915886	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915888	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2915890	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2915891	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915892	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915893	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915894	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964568	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2964569	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964570	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964572	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964574	0.80[ASN][1000 genomes]
rs2964576	0.85[ASN][1000 genomes]
rs2964578	0.82[ASN][1000 genomes]
rs2964580	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964581	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964582	0.82[ASN][1000 genomes]
rs2964584	0.82[ASN][1000 genomes]
rs2964585	0.81[ASN][1000 genomes]
rs2964610	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964611	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964613	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35692301	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4360031	0.85[EUR][1000 genomes]
rs4362933	0.86[EUR][1000 genomes]
rs4379180	0.87[EUR][1000 genomes]
rs4419575	0.88[EUR][1000 genomes]
rs4472253	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4510568	0.88[EUR][1000 genomes]
rs4541649	0.86[EUR][1000 genomes]
rs4555782	0.86[EUR][1000 genomes]
rs4571461	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4594844	0.86[EUR][1000 genomes]
rs4629583	0.88[EUR][1000 genomes]
rs4629586	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62377931	0.85[ASN][1000 genomes]
rs62394144	0.86[EUR][1000 genomes]
rs6579906	0.86[EUR][1000 genomes]
rs6579908	0.86[EUR][1000 genomes]
rs6579909	0.86[EUR][1000 genomes]
rs6579910	0.80[EUR][1000 genomes]
rs6863833	0.85[EUR][1000 genomes]
rs6863837	0.85[EUR][1000 genomes]
rs6879461	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6890099	0.82[ASN][1000 genomes]
rs7341167	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7702751	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7715560	0.80[EUR][1000 genomes]
rs7715874	0.82[EUR][1000 genomes]
rs7720579	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7733241	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7734314	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7735811	0.82[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151138800-151149600	Weak transcription	Aorta	Aorta
2	chr5:151138800-151149800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:151139200-151149600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:151139400-151149800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:151139400-151149800	Weak transcription	Right Atrium	heart
6	chr5:151143200-151149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:151145600-151150000	Weak transcription	Pancreas	Pancrea
8	chr5:151145800-151149600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:151145800-151150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:151146000-151149800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:151147200-151149800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:151148600-151149600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:151148600-151149600	Enhancers	Primary B cells from cord blood	blood
14	chr5:151148600-151149800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:151148800-151149600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr5:151148800-151149800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:151148800-151149800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:151148800-151149800	Weak transcription	A549	lung
19	chr5:151149000-151149600	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:151149000-151149600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr5:151149000-151149600	Enhancers	GM12878-XiMat	blood
22	chr5:151149000-151149600	Enhancers	K562	blood
23	chr5:151149000-151149800	Enhancers	Primary B cells from peripheral blood	blood
24	chr5:151149000-151149800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr5:151149000-151149800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:151149000-151149800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:151149000-151150000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:151149000-151150000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr5:151149000-151150000	Enhancers	Placenta	Placenta
30	chr5:151149000-151150000	Enhancers	Spleen	Spleen
31	chr5:151149000-151153200	Active TSS	Rectal Smooth Muscle	rectum
32	chr5:151149200-151149600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:151149200-151149600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:151149200-151149600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:151149200-151149600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:151149200-151149600	Enhancers	Brain Germinal Matrix	brain
37	chr5:151149200-151149600	Enhancers	Brain Hippocampus Middle	brain
38	chr5:151149200-151149600	Enhancers	Fetal Brain Female	brain
39	chr5:151149200-151149600	Enhancers	Small Intestine	intestine
40	chr5:151149200-151149600	Enhancers	Dnd41	blood
41	chr5:151149200-151149600	Enhancers	Hela-S3	cervix
42	chr5:151149200-151149800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr5:151149200-151149800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr5:151149200-151149800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr5:151149200-151149800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr5:151149200-151149800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr5:151149200-151149800	Enhancers	Fetal Muscle Leg	muscle
48	chr5:151149200-151150000	Enhancers	Primary hematopoietic stem cells	blood
49	chr5:151149200-151150200	Enhancers	Fetal Heart	heart
50	chr5:151149400-151149600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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