Variant report

Variant	rs2915883
Chromosome Location	chr5:151136148-151136149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr5:151135874-151136616	K562	blood:	n/a	n/a
2	POU2F2	chr5:151135999-151136289	GM12891	blood:	n/a	n/a
3	IRF1	chr5:151135916-151136166	K562	blood:	n/a	n/a
4	POLR2A	chr5:151135775-151138585	GM12878	blood:	n/a	n/a
5	POLR2A	chr5:151135899-151136643	GM12878	blood:	n/a	n/a
6	ZNF384	chr5:151135832-151136209	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:151130438..151133426-chr5:151135188..151138326,3	MCF-7	breast:
2	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
3	chr5:151061995..151063530-chr5:151135806..151138162,2	MCF-7	breast:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10044368	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10065313	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075101	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1042877	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476776	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10476778	0.87[EUR][1000 genomes]
rs1062177	0.81[ASN][1000 genomes]
rs11167557	0.86[EUR][1000 genomes]
rs11954338	0.87[EUR][1000 genomes]
rs12654877	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12658422	0.86[EUR][1000 genomes]
rs1433041	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549920	0.84[ASN][1000 genomes]
rs1549921	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17741826	0.81[ASN][1000 genomes]
rs17804178	0.81[ASN][1000 genomes]
rs1972780	0.82[ASN][1000 genomes]
rs1978710	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016409	0.84[ASN][1000 genomes]
rs2053063	0.81[ASN][1000 genomes]
rs2347596	0.81[ASN][1000 genomes]
rs2347597	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915815	0.82[ASN][1000 genomes]
rs2915816	0.90[ASN][1000 genomes]
rs2915817	0.82[ASN][1000 genomes]
rs2915818	0.82[ASN][1000 genomes]
rs2915821	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2915822	0.84[ASN][1000 genomes]
rs2915823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915824	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915826	0.81[ASN][1000 genomes]
rs2915827	0.81[ASN][1000 genomes]
rs2915828	0.81[ASN][1000 genomes]
rs2915829	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915868	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915869	0.81[ASN][1000 genomes]
rs2915870	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915871	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915872	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915873	0.82[ASN][1000 genomes]
rs2915874	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915876	0.81[ASN][1000 genomes]
rs2915877	0.81[ASN][1000 genomes]
rs2915878	0.81[ASN][1000 genomes]
rs2915879	0.84[ASN][1000 genomes]
rs2915880	0.84[ASN][1000 genomes]
rs2915881	0.84[ASN][1000 genomes]
rs2915882	0.84[ASN][1000 genomes]
rs2915885	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2915886	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915888	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2915890	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2915891	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915892	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915893	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915894	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964568	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2964569	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2964570	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964571	0.81[ASN][1000 genomes]
rs2964572	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964573	0.81[ASN][1000 genomes]
rs2964574	0.82[ASN][1000 genomes]
rs2964576	0.81[ASN][1000 genomes]
rs2964577	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964578	0.84[ASN][1000 genomes]
rs2964580	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2964581	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2964582	0.84[ASN][1000 genomes]
rs2964583	0.81[ASN][1000 genomes]
rs2964584	0.84[ASN][1000 genomes]
rs2964585	0.85[ASN][1000 genomes]
rs2964587	0.81[ASN][1000 genomes]
rs2964588	0.81[ASN][1000 genomes]
rs2964589	0.81[ASN][1000 genomes]
rs2964590	0.81[ASN][1000 genomes]
rs2964591	0.82[ASN][1000 genomes]
rs2964592	0.82[ASN][1000 genomes]
rs2964593	0.81[ASN][1000 genomes]
rs2964610	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964611	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964613	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35692301	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4360031	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4362933	0.87[EUR][1000 genomes]
rs4379180	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4419575	0.88[EUR][1000 genomes]
rs4472253	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4510568	0.88[EUR][1000 genomes]
rs4541649	0.87[EUR][1000 genomes]
rs4555782	0.87[EUR][1000 genomes]
rs4571461	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4594844	0.87[EUR][1000 genomes]
rs4629583	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4629586	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62377931	0.81[ASN][1000 genomes]
rs62394144	0.86[EUR][1000 genomes]
rs6579906	0.87[EUR][1000 genomes]
rs6579908	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6579909	0.86[EUR][1000 genomes]
rs6579910	0.80[EUR][1000 genomes]
rs6863833	0.86[EUR][1000 genomes]
rs6863837	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6879461	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72802204	0.81[ASN][1000 genomes]
rs7341167	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7702751	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7715560	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7715874	0.82[EUR][1000 genomes]
rs7720579	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7733241	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7734314	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7735811	0.82[EUR][1000 genomes]
rs892005	0.81[ASN][1000 genomes]
rs892006	0.81[ASN][1000 genomes]
rs973529	0.81[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:151120800-151136800	Weak transcription	Ovary	ovary
5	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
6	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151123400-151137200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:151124400-151136200	Weak transcription	Colonic Mucosa	Colon
9	chr5:151125000-151136800	Weak transcription	Psoas Muscle	Psoas
10	chr5:151125600-151136200	Weak transcription	Right Atrium	heart
11	chr5:151125800-151136800	Weak transcription	Right Ventricle	heart
12	chr5:151125800-151137000	Weak transcription	Fetal Brain Male	brain
13	chr5:151126000-151136800	Weak transcription	Esophagus	oesophagus
14	chr5:151126000-151136800	Weak transcription	Pancreas	Pancrea
15	chr5:151126200-151136400	Weak transcription	Left Ventricle	heart
16	chr5:151126200-151136400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:151126200-151136600	Weak transcription	Fetal Brain Female	brain
18	chr5:151126200-151136800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:151126200-151137000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:151126200-151137200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:151126400-151136400	Weak transcription	Thymus	Thymus
22	chr5:151126400-151136400	Weak transcription	HMEC	breast
23	chr5:151126400-151136600	Weak transcription	Brain Germinal Matrix	brain
24	chr5:151126400-151136600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:151126400-151136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:151126400-151136800	Weak transcription	Fetal Heart	heart
27	chr5:151127200-151136600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:151129800-151136200	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:151129800-151136400	Weak transcription	Brain Anterior Caudate	brain
30	chr5:151129800-151136800	Weak transcription	Brain Angular Gyrus	brain
31	chr5:151129800-151136800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:151130000-151136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:151130000-151136400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:151130000-151136400	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:151131400-151136800	Weak transcription	NH-A	brain
36	chr5:151131600-151136200	Weak transcription	NHDF-Ad	bronchial
37	chr5:151132800-151136200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr5:151132800-151136200	Weak transcription	HUVEC	blood vessel
39	chr5:151132800-151137000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:151132800-151137400	Weak transcription	Aorta	Aorta
41	chr5:151133000-151136600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:151133000-151136800	Weak transcription	HSMMtube	muscle
43	chr5:151133000-151137000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:151133200-151136200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:151133200-151136600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:151133200-151136800	Weak transcription	HSMM	muscle
47	chr5:151133200-151137000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:151133400-151136200	Enhancers	Fetal Intestine Small	intestine
49	chr5:151133400-151136200	Weak transcription	NHLF	lung
50	chr5:151133400-151136400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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