The 2.0 version of rSNPBase

Variant report

Variant rs2964590
Chromosome Location chr5:151118146-151118147
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:151098000-151120200 Weak transcription Duodenum Mucosa Duodenum
2 chr5:151098000-151124800 Weak transcription Aorta Aorta
3 chr5:151101800-151118400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr5:151101800-151124800 Weak transcription Gastric stomach
5 chr5:151103000-151120000 Weak transcription Primary B cells from peripheral blood blood
6 chr5:151106400-151119000 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr5:151106400-151119400 Weak transcription Fetal Intestine Large intestine
8 chr5:151106600-151119200 Weak transcription Rectal Smooth Muscle rectum
9 chr5:151107200-151119400 Weak transcription Brain Anterior Caudate brain
10 chr5:151107600-151120200 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr5:151108000-151122600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr5:151108600-151122800 Weak transcription Thymus Thymus
13 chr5:151109000-151119600 Weak transcription Brain Angular Gyrus brain
14 chr5:151109400-151119600 Weak transcription Brain Cingulate Gyrus brain
15 chr5:151109600-151119400 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr5:151109600-151120400 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr5:151110200-151119000 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr5:151110400-151118200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr5:151110400-151119800 Weak transcription Fetal Intestine Small intestine
20 chr5:151110800-151119000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr5:151110800-151119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr5:151110800-151122200 Weak transcription Dnd41 blood
23 chr5:151110800-151122400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:151111200-151119000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr5:151111400-151121200 Weak transcription Primary hematopoietic stem cells blood
26 chr5:151111800-151120200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr5:151112400-151120200 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr5:151112400-151125000 Weak transcription Esophagus oesophagus
29 chr5:151113000-151118800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr5:151113200-151120000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr5:151113400-151120200 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr5:151113600-151118200 Weak transcription A549 lung
33 chr5:151114000-151120000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr5:151114800-151119000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr5:151115000-151119000 Weak transcription Lung lung
36 chr5:151115400-151118400 Strong transcription Primary T cells from cord blood blood
37 chr5:151115400-151119000 Weak transcription Left Ventricle heart
38 chr5:151115400-151119400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
39 chr5:151116000-151119600 Strong transcription Primary neutrophils fromperipheralblood blood
40 chr5:151116000-151121400 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr5:151116200-151118400 Enhancers Adipose Nuclei Adipose
42 chr5:151116200-151119000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr5:151116200-151119600 Strong transcription Primary monocytes fromperipheralblood blood
44 chr5:151116200-151121600 Weak transcription Liver Liver
45 chr5:151116600-151118400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr5:151116600-151119000 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr5:151116600-151119000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
48 chr5:151116600-151119800 Strong transcription Primary T regulatory cells fromperipheralblood blood
49 chr5:151116600-151121200 Enhancers Placenta Amnion Placenta Amnion
50 chr5:151116800-151118400 Enhancers Ovary ovary

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Last update: Aug 31, 2015