Variant report

Variant	rs7733241
Chromosome Location	chr5:151208890-151208891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151151958..151154674-chr5:151208586..151211335,2	K562	blood:
2	chr5:151191353..151193203-chr5:151208470..151209979,2	K562	blood:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10044368	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10050657	0.83[ASN][1000 genomes]
rs10062169	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10065313	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10075101	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10078632	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10079787	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1042877	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463320	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10476776	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476778	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062177	0.87[CHB][hapmap]
rs11167557	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11167559	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11954338	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12108921	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12109022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12109585	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12515762	0.84[ASN][1000 genomes]
rs12654573	0.84[ASN][1000 genomes]
rs12654877	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12658422	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1366238	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1428159	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1428160	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433041	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1549920	0.87[CHB][hapmap]
rs1549921	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17741826	0.87[CHB][hapmap]
rs1978710	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2033212	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2071221	0.87[YRI][hapmap]
rs2347597	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913878	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2913879	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913881	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913882	0.81[ASN][1000 genomes]
rs2913888	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913893	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2915822	0.87[CHB][hapmap]
rs2915823	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2915824	0.82[EUR][1000 genomes]
rs2915826	0.87[CHB][hapmap]
rs2915827	0.87[CHB][hapmap]
rs2915829	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2915868	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915870	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915871	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915872	0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915874	0.89[EUR][1000 genomes]
rs2915876	0.87[CHB][hapmap]
rs2915878	0.87[CHB][hapmap]
rs2915879	0.87[CHB][hapmap]
rs2915880	0.87[CHB][hapmap]
rs2915883	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2915885	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915886	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2915888	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915890	0.95[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915891	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915892	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915893	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915894	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2964568	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964569	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2964570	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2964572	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2964574	0.87[CHB][hapmap]
rs2964577	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2964580	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2964581	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2964584	0.87[CHB][hapmap]
rs2964587	0.87[CHB][hapmap]
rs2964591	0.87[CHB][hapmap]
rs2964592	0.87[CHB][hapmap]
rs2964597	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2964599	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2964601	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964603	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964604	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964606	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964610	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964611	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2964613	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35692301	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4075273	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4076138	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4259159	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4331885	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4360031	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4362933	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379180	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4419575	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4472253	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4478307	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4510568	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4541649	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4555782	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4571461	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4594844	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4629583	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4629586	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62377945	0.82[ASN][1000 genomes]
rs62394144	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579897	0.87[CHB][hapmap]
rs6579906	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6579908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6579909	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6579910	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6863833	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6863837	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6868371	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6870491	0.83[ASN][1000 genomes]
rs6878691	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6879461	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6896518	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72802219	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7341167	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7702751	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7711609	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7711771	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7712779	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7715560	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715874	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7719617	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs7720579	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7725327	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7728956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7729026	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7734314	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7735811	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs892006	0.87[CHB][hapmap]
rs9324712	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9324714	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7733241	SYNPO	cis	parietal	SCAN
rs7733241	C5orf46	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151183600-151210600	Weak transcription	Lung	lung
2	chr5:151183800-151209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:151183800-151213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:151188200-151210400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:151190400-151210400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:151192400-151209800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:151192400-151210000	Weak transcription	Aorta	Aorta
8	chr5:151192400-151211200	Weak transcription	NHLF	lung
9	chr5:151192600-151209800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr5:151192800-151209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:151192800-151209800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:151193000-151210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:151193200-151210600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:151193600-151211400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:151194800-151209000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:151194800-151209600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:151194800-151210400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:151196600-151210400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:151196800-151209400	Weak transcription	Liver	Liver
20	chr5:151196800-151211400	Weak transcription	GM12878-XiMat	blood
21	chr5:151197000-151211400	Weak transcription	NH-A	brain
22	chr5:151198200-151210600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:151200200-151211400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:151203800-151210400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:151204400-151210000	Strong transcription	HSMM	muscle
26	chr5:151204800-151210000	Weak transcription	HSMMtube	muscle
27	chr5:151205600-151210000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:151205600-151210800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:151205800-151209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:151205800-151211200	Weak transcription	Primary T cells from cord blood	blood
31	chr5:151206200-151209800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:151206400-151210200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:151207200-151210000	Weak transcription	HMEC	breast
34	chr5:151207400-151210000	Weak transcription	NHEK	skin
35	chr5:151207800-151211600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:151207800-151212400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:151208200-151210200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:151208800-151209800	Weak transcription	A549	lung
39	chr5:151208800-151210600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:151208800-151210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:151208800-151211000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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