Variant report

Variant	rs2915870
Chromosome Location	chr5:151165743-151165744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151164681..151166683-chr5:151167760..151170688,3	K562	blood:
2	chr5:151164080..151166374-chr5:151167044..151170851,3	K562	blood:
3	chr5:151136859..151139236-chr5:151164379..151166253,2	MCF-7	breast:
4	chr5:151164141..151166497-chr5:151174863..151177612,2	MCF-7	breast:
5	chr5:151151210..151153371-chr5:151165047..151166781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10044368	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10065313	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10075101	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1042877	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476776	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476778	0.86[EUR][1000 genomes]
rs1062177	0.85[ASN][1000 genomes]
rs11167557	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11954338	0.87[EUR][1000 genomes]
rs12654877	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658422	0.85[EUR][1000 genomes]
rs1433041	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1549920	0.81[ASN][1000 genomes]
rs1549921	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17804178	0.85[ASN][1000 genomes]
rs1978710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016409	0.81[ASN][1000 genomes]
rs2053063	0.85[ASN][1000 genomes]
rs2347596	0.85[ASN][1000 genomes]
rs2347597	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915816	0.87[ASN][1000 genomes]
rs2915821	0.84[ASN][1000 genomes]
rs2915822	0.81[ASN][1000 genomes]
rs2915823	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915824	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915829	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915868	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915869	0.85[ASN][1000 genomes]
rs2915871	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915872	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915873	0.82[ASN][1000 genomes]
rs2915874	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915879	0.81[ASN][1000 genomes]
rs2915880	0.81[ASN][1000 genomes]
rs2915881	0.81[ASN][1000 genomes]
rs2915882	0.81[ASN][1000 genomes]
rs2915883	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915885	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915886	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2915887	0.82[ASN][1000 genomes]
rs2915888	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915890	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915891	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915892	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915893	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915894	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964568	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964569	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964570	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964571	0.85[ASN][1000 genomes]
rs2964572	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964573	0.82[ASN][1000 genomes]
rs2964574	0.82[ASN][1000 genomes]
rs2964577	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964578	0.81[ASN][1000 genomes]
rs2964580	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964581	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964582	0.81[ASN][1000 genomes]
rs2964584	0.81[ASN][1000 genomes]
rs2964585	0.82[ASN][1000 genomes]
rs2964610	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2964611	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2964612	0.83[ASN][1000 genomes]
rs2964613	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35692301	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4360031	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4362933	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4379180	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4419575	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4472253	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4510568	0.87[EUR][1000 genomes]
rs4541649	0.86[EUR][1000 genomes]
rs4555782	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4571461	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4594844	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4629583	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4629586	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394144	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6579906	0.86[EUR][1000 genomes]
rs6579908	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6579909	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6579910	0.81[AMR][1000 genomes]
rs6863833	0.85[EUR][1000 genomes]
rs6863837	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6879461	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802204	0.85[ASN][1000 genomes]
rs7341167	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7702751	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7715560	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7715874	0.82[EUR][1000 genomes]
rs7720579	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733241	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7734314	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735811	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs892005	0.85[ASN][1000 genomes]
rs892006	0.85[ASN][1000 genomes]
rs973529	0.85[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
2	chr5:151153000-151167400	Weak transcription	Lung	lung
3	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
5	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
9	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
11	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
13	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
14	chr5:151156200-151166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
16	chr5:151156800-151166800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:151156800-151168200	Weak transcription	NHLF	lung
18	chr5:151157000-151165800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:151157200-151166200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:151157400-151167200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:151157800-151166000	Weak transcription	Thymus	Thymus
22	chr5:151158000-151165800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr5:151158000-151167200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:151158000-151168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:151158200-151166000	Weak transcription	Placenta	Placenta
26	chr5:151158200-151166000	Weak transcription	NHEK	skin
27	chr5:151158200-151167200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
29	chr5:151158600-151166200	Weak transcription	Fetal Stomach	stomach
30	chr5:151158600-151167600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr5:151158800-151165800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:151158800-151166000	Weak transcription	Fetal Thymus	thymus
33	chr5:151158800-151166600	Weak transcription	Fetal Intestine Large	intestine
34	chr5:151158800-151167200	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:151158800-151167400	Weak transcription	Pancreas	Pancrea
36	chr5:151159000-151165800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:151159000-151165800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr5:151159000-151166800	Weak transcription	HMEC	breast
39	chr5:151159400-151166000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:151159400-151166000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:151159800-151165800	Weak transcription	HUVEC	blood vessel
42	chr5:151160000-151166000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:151160400-151166000	Weak transcription	Ovary	ovary
44	chr5:151160400-151166000	Enhancers	A549	lung
45	chr5:151160400-151168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:151160400-151168200	Weak transcription	Gastric	stomach
47	chr5:151160400-151169400	Weak transcription	Right Atrium	heart
48	chr5:151161200-151166200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr5:151161200-151166800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr5:151161200-151170400	Weak transcription	Brain Anterior Caudate	brain

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