Variant report

Variant	rs11954338
Chromosome Location	chr5:151213283-151213284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10044368	0.98[EUR][1000 genomes]
rs10058885	0.85[AFR][1000 genomes]
rs10062169	0.82[EUR][1000 genomes]
rs10065313	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075101	0.98[EUR][1000 genomes]
rs10078632	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10079787	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1042877	0.97[EUR][1000 genomes]
rs10463320	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10476776	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476778	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11167557	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11167559	0.82[EUR][1000 genomes]
rs12108921	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12109022	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12109585	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12515762	0.85[ASN][1000 genomes]
rs12654573	0.85[ASN][1000 genomes]
rs12654877	0.96[EUR][1000 genomes]
rs12658422	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1366238	0.82[EUR][1000 genomes]
rs1428159	0.82[EUR][1000 genomes]
rs1428160	0.82[EUR][1000 genomes]
rs1433041	0.97[EUR][1000 genomes]
rs1549921	0.81[EUR][1000 genomes]
rs1978710	0.87[EUR][1000 genomes]
rs2033212	0.81[EUR][1000 genomes]
rs2347597	0.97[EUR][1000 genomes]
rs2913878	0.82[EUR][1000 genomes]
rs2913879	0.81[EUR][1000 genomes]
rs2913881	0.82[EUR][1000 genomes]
rs2913888	0.82[EUR][1000 genomes]
rs2913889	0.82[EUR][1000 genomes]
rs2913892	0.82[EUR][1000 genomes]
rs2913893	0.81[EUR][1000 genomes]
rs2913894	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2915823	0.88[EUR][1000 genomes]
rs2915824	0.82[EUR][1000 genomes]
rs2915829	0.85[EUR][1000 genomes]
rs2915868	0.97[EUR][1000 genomes]
rs2915870	0.87[EUR][1000 genomes]
rs2915871	0.85[EUR][1000 genomes]
rs2915872	0.86[EUR][1000 genomes]
rs2915874	0.89[EUR][1000 genomes]
rs2915883	0.87[EUR][1000 genomes]
rs2915885	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2915886	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2915888	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2915890	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2915891	0.98[EUR][1000 genomes]
rs2915892	0.98[EUR][1000 genomes]
rs2915893	0.98[EUR][1000 genomes]
rs2915894	0.98[EUR][1000 genomes]
rs2964568	0.97[EUR][1000 genomes]
rs2964569	0.93[EUR][1000 genomes]
rs2964570	0.96[EUR][1000 genomes]
rs2964572	0.93[EUR][1000 genomes]
rs2964577	0.87[EUR][1000 genomes]
rs2964580	0.89[EUR][1000 genomes]
rs2964581	0.89[EUR][1000 genomes]
rs2964597	0.82[EUR][1000 genomes]
rs2964599	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2964601	0.82[EUR][1000 genomes]
rs2964603	0.81[EUR][1000 genomes]
rs2964604	0.82[EUR][1000 genomes]
rs2964606	0.82[EUR][1000 genomes]
rs2964610	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964611	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2964613	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35692301	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075273	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4076138	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4259159	0.82[EUR][1000 genomes]
rs4331885	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4360031	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4362933	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4379180	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4419575	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4472253	0.98[EUR][1000 genomes]
rs4478307	0.82[EUR][1000 genomes]
rs4510568	0.99[EUR][1000 genomes]
rs4541649	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4555782	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4571461	0.98[EUR][1000 genomes]
rs4594844	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4629583	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4629586	0.98[EUR][1000 genomes]
rs62377945	0.83[ASN][1000 genomes]
rs62394144	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6579906	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6579908	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6579909	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6579910	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6863833	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6863837	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6868371	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6878691	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6879461	0.97[EUR][1000 genomes]
rs6896518	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72802219	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7341167	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7702751	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7711609	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7711771	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7712779	0.82[EUR][1000 genomes]
rs7715560	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715874	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7720579	0.98[EUR][1000 genomes]
rs7725327	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7728956	0.81[EUR][1000 genomes]
rs7729026	0.82[EUR][1000 genomes]
rs7733241	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7734314	0.97[EUR][1000 genomes]
rs7735811	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9324712	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9324714	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151183800-151213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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