Variant report

Variant	rs10058885
Chromosome Location	chr5:151210442-151210443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151151958..151154674-chr5:151208586..151211335,2	K562	blood:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10036616	1.00[EUR][1000 genomes]
rs10059511	0.98[EUR][1000 genomes]
rs10062143	0.88[EUR][1000 genomes]
rs10064300	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10074267	0.98[EUR][1000 genomes]
rs10074385	0.98[EUR][1000 genomes]
rs10074443	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075210	0.92[EUR][1000 genomes]
rs10477000	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11953528	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11954338	0.85[AFR][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11958614	0.89[EUR][1000 genomes]
rs12332554	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12658422	0.84[AFR][1000 genomes]
rs28445353	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28917168	0.88[EUR][1000 genomes]
rs28917174	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28917193	0.88[EUR][1000 genomes]
rs3209060	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3812003	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3812004	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57723600	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6876258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6881068	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6898736	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73281646	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7356721	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7726718	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731472	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151183600-151210600	Weak transcription	Lung	lung
2	chr5:151183800-151213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:151192400-151211200	Weak transcription	NHLF	lung
4	chr5:151193200-151210600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:151193600-151211400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:151196800-151211400	Weak transcription	GM12878-XiMat	blood
7	chr5:151197000-151211400	Weak transcription	NH-A	brain
8	chr5:151198200-151210600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:151200200-151211400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:151205600-151210800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:151205800-151211200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:151207800-151211600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:151207800-151212400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:151208800-151210600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:151208800-151210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:151208800-151211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:151209600-151210600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:151209600-151211800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr5:151209800-151211000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:151209800-151211800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:151209800-151211800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr5:151209800-151212000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr5:151210000-151211800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:151210000-151212000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:151210200-151210800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:151210200-151211600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:151210400-151210800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:151210400-151211000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:151210400-151211000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr5:151210400-151211400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr5:151210400-151211600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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