Variant report

Variant	rs6881068
Chromosome Location	chr5:151158863-151158864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151038196..151041109-chr5:151157655..151161626,4	K562	blood:
2	chr5:151157780..151160466-chr5:151195592..151198103,2	K562	blood:
3	chr5:151157663..151160002-chr5:151190625..151192955,2	K562	blood:
4	chr5:151157144..151159075-chr5:151199761..151202393,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10036616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10058885	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs10079457	0.89[CEU][hapmap]
rs10477000	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.85[EUR][1000 genomes]
rs12332554	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[CHB][hapmap]
rs28445353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.92[EUR][1000 genomes]
rs28917174	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.92[EUR][1000 genomes]
rs2913890	0.94[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs3209060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734314	0.85[ASW][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151152800-151160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:151152800-151163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:151153000-151160000	Weak transcription	Gastric	stomach
4	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
5	chr5:151153000-151167400	Weak transcription	Lung	lung
6	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151153800-151160400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:151153800-151162000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
11	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
15	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:151154800-151165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:151155200-151159600	Genic enhancers	Hela-S3	cervix
18	chr5:151155200-151160600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr5:151155200-151163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
21	chr5:151155400-151160600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:151155800-151159000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:151155800-151159200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:151155800-151159200	Genic enhancers	HepG2	liver
25	chr5:151155800-151159400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:151155800-151163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
29	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
30	chr5:151156000-151159400	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:151156200-151160000	Weak transcription	Brain Anterior Caudate	brain
32	chr5:151156200-151166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
34	chr5:151156400-151159000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr5:151156400-151159000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:151156600-151159000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:151156600-151159600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:151156600-151160800	Weak transcription	Adipose Nuclei	Adipose
39	chr5:151156800-151159000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:151156800-151159000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:151156800-151159000	Strong transcription	HMEC	breast
42	chr5:151156800-151160800	Weak transcription	Brain Substantia Nigra	brain
43	chr5:151156800-151166800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr5:151156800-151168200	Weak transcription	NHLF	lung
45	chr5:151157000-151159000	Genic enhancers	K562	blood
46	chr5:151157000-151159200	Strong transcription	Osteobl	bone
47	chr5:151157000-151165800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr5:151157200-151166200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:151157400-151160000	Weak transcription	Left Ventricle	heart
50	chr5:151157400-151160000	Weak transcription	Right Atrium	heart

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