Variant report

Variant	rs11958614
Chromosome Location	chr5:151198772-151198773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10036616	0.83[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs10058885	0.89[EUR][1000 genomes]
rs10059511	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs10064300	0.83[EUR][1000 genomes]
rs10074267	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs10074385	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs10074443	0.87[EUR][1000 genomes]
rs10075210	0.83[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs10079457	0.83[CEU][hapmap];0.87[GIH][hapmap];0.86[YRI][hapmap]
rs10477000	0.83[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs11953528	0.84[EUR][1000 genomes]
rs11954396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956353	0.83[CEU][hapmap]
rs12332554	0.85[EUR][1000 genomes]
rs28445353	0.85[EUR][1000 genomes]
rs28917168	0.81[EUR][1000 genomes]
rs28917174	0.81[EUR][1000 genomes]
rs28917193	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2913890	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap]
rs3209060	0.89[EUR][1000 genomes]
rs3812003	0.83[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs3812004	0.83[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs57723600	0.83[EUR][1000 genomes]
rs6876258	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6881068	0.83[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs6898736	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs73281646	0.85[EUR][1000 genomes]
rs7356721	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs7726718	0.88[EUR][1000 genomes]
rs7731472	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11958614	PDE6A	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151171800-151205200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:151179800-151208400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151183000-151199600	Weak transcription	Small Intestine	intestine
5	chr5:151183600-151210600	Weak transcription	Lung	lung
6	chr5:151183800-151199600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:151183800-151200200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:151183800-151203000	Weak transcription	Gastric	stomach
9	chr5:151183800-151204400	Weak transcription	Pancreas	Pancrea
10	chr5:151183800-151206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:151183800-151208400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:151183800-151209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:151183800-151213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:151184000-151200400	Weak transcription	Brain Angular Gyrus	brain
15	chr5:151188200-151210400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:151190000-151204800	Weak transcription	Fetal Stomach	stomach
17	chr5:151190400-151199600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:151190400-151210400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:151192200-151208200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:151192400-151205200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:151192400-151209800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:151192400-151210000	Weak transcription	Aorta	Aorta
23	chr5:151192400-151211200	Weak transcription	NHLF	lung
24	chr5:151192600-151200000	Weak transcription	Right Ventricle	heart
25	chr5:151192600-151205200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr5:151192600-151206000	Weak transcription	Thymus	Thymus
27	chr5:151192600-151206200	Weak transcription	Psoas Muscle	Psoas
28	chr5:151192600-151209800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:151192800-151199400	Weak transcription	Brain Substantia Nigra	brain
30	chr5:151192800-151199400	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:151192800-151199600	Weak transcription	Ovary	ovary
32	chr5:151192800-151204200	Weak transcription	Fetal Kidney	kidney
33	chr5:151192800-151205000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:151192800-151205200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:151192800-151208400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:151192800-151209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:151192800-151209800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:151193000-151200200	Weak transcription	Brain Hippocampus Middle	brain
39	chr5:151193000-151204400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr5:151193000-151205600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:151193000-151207600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:151193000-151210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:151193200-151202400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:151193200-151210600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:151193600-151211400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr5:151194200-151200000	Weak transcription	Adipose Nuclei	Adipose
47	chr5:151194400-151207800	Weak transcription	Primary B cells from cord blood	blood
48	chr5:151194600-151203000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr5:151194800-151203000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:151194800-151204800	Weak transcription	Fetal Intestine Large	intestine

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