Variant report

Variant	rs73281646
Chromosome Location	chr5:151163366-151163367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151149754..151152675-chr5:151162917..151164797,2	MCF-7	breast:
2	chr5:151159444..151163789-chr5:151168224..151172241,5	K562	blood:
3	chr5:151161793..151163617-chr5:151173820..151176687,2	K562	blood:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10058885	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059511	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10062143	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064300	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074267	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074385	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10074443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075210	0.96[EUR][1000 genomes]
rs10477000	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953528	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954396	0.87[EUR][1000 genomes]
rs11956353	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958614	0.85[EUR][1000 genomes]
rs12332554	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917168	0.92[EUR][1000 genomes]
rs28917174	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28917193	0.92[EUR][1000 genomes]
rs3209060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812003	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723600	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876258	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898736	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726718	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7731472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
2	chr5:151153000-151167400	Weak transcription	Lung	lung
3	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
6	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
10	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:151154800-151165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:151155200-151163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
14	chr5:151155800-151163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
17	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
18	chr5:151156200-151166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
20	chr5:151156800-151166800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:151156800-151168200	Weak transcription	NHLF	lung
22	chr5:151157000-151165800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:151157200-151166200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:151157400-151167200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr5:151157600-151163400	Weak transcription	Small Intestine	intestine
26	chr5:151157600-151165200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr5:151157800-151164000	Weak transcription	Fetal Kidney	kidney
28	chr5:151157800-151166000	Weak transcription	Thymus	Thymus
29	chr5:151158000-151163600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:151158000-151164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:151158000-151165800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr5:151158000-151167200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:151158000-151168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:151158200-151163400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:151158200-151164000	Enhancers	Primary T cells from cord blood	blood
36	chr5:151158200-151165600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr5:151158200-151166000	Weak transcription	Placenta	Placenta
38	chr5:151158200-151166000	Weak transcription	NHEK	skin
39	chr5:151158200-151167200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
41	chr5:151158600-151165000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:151158600-151166200	Weak transcription	Fetal Stomach	stomach
43	chr5:151158600-151167600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:151158800-151165600	Weak transcription	Fetal Intestine Small	intestine
45	chr5:151158800-151165800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:151158800-151166000	Weak transcription	Fetal Thymus	thymus
47	chr5:151158800-151166600	Weak transcription	Fetal Intestine Large	intestine
48	chr5:151158800-151167200	Weak transcription	Fetal Muscle Leg	muscle
49	chr5:151158800-151167400	Weak transcription	Pancreas	Pancrea
50	chr5:151159000-151165800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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