Variant report

Variant	rs10062143
Chromosome Location	chr5:151147042-151147043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151146787-151147146	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:151141912..151146351-chr5:151146659..151152863,9	MCF-7	breast:
2	chr5:151146976..151149918-chr5:151242837..151245370,2	K562	blood:
3	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213433	TF binding region
G3BP1	TF binding region
ENSG00000213433	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036616	0.89[CEU][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes]
rs10058885	0.88[EUR][1000 genomes]
rs10059511	0.90[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs10064300	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10074267	0.90[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs10074385	0.87[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs10074443	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075210	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs10079457	0.89[CEU][hapmap]
rs10477000	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953528	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11956353	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12332554	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28445353	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28917168	0.88[EUR][1000 genomes]
rs28917174	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28917193	0.88[EUR][1000 genomes]
rs2913890	0.84[CEU][hapmap]
rs3209060	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812003	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812004	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57723600	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876258	0.90[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6881068	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898736	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73281646	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7356721	0.90[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7726718	0.87[EUR][1000 genomes]
rs7731472	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151138800-151149600	Weak transcription	Aorta	Aorta
2	chr5:151138800-151149800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:151139000-151148800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:151139200-151147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:151139200-151149600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:151139400-151147400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:151139400-151148000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:151139400-151149800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:151139400-151149800	Weak transcription	Right Atrium	heart
10	chr5:151143200-151149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:151145600-151150000	Weak transcription	Pancreas	Pancrea
12	chr5:151145800-151149600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:151145800-151150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:151146000-151149800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:151146800-151147200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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